SCHEDULE 14A INFORMATION

           Proxy Statement Pursuant to Section 14(a) of
           the Securities Exchange Act of 1934 (Amendment No.    )

      Filed by the Registrant [X]

      Filed by a Party other than the Registrant [ ]

      Check the appropriate box:
      [ ]   Preliminary Proxy Statement
      [ ]   Confidential, for Use of the Commission Only
            (as permitted by Rule 14a-6(e)(2))
      [X]   Definitive Proxy Statement
      [ ]   Definitive Additional Materials
      [ ]   Soliciting Material Pursuant to [S] 240.14a-12

                       JACK HENRY & ASSOCIATES, INC.
             -----------------------------------------------
            (Name of Registrant as Specified in its Charter)

    ------------------------------------------------------------------------
    (Name of Person(s) Filing Proxy Statement, if other than the Registrant)

      Payment of Filing Fee (Check the appropriate box):

      [X]  No fee required.

      [ ]  Fee computed on table below per Exchange Act Rules 14a-
           6(i)(1) and 0-11.

        1) Title of each class of securities to which transaction applies:
           ________________________________________________________________
        2) Aggregate number of securities to which transaction applies:
           ________________________________________________________________
        3) Per unit price or other underlying value of transaction
           computed pursuant to Exchange Act Rule 0-11 (set forth the
           amount on which the filing fee is calculated and state how it
           was determined):
           ________________________________________________________________
        4) Proposed maximum aggregate value of transaction:
           ________________________________________________________________
        5) Total fee paid:
           ________________________________________________________________

      [ ]  Fee paid previously with preliminary materials.

      [ ]  Check box if any part of the fee is offset as provided by
        Exchange Act Rule 0-11(a)(2) and identify the filing for which
        the offsetting fee was paid previously.  Identify the previous
        filing by registration statement number, or the Form or
        Schedule and the date of its filing.

        1) Amount Previously Paid:  ________________________________________
        2) Form, Schedule or Registration Statement No.: ___________________
        3) Filing Party: ___________________________________________________
        4) Date Filed: _____________________________________________________





                        JACK HENRY & ASSOCIATES, INC.
                         663 Highway 60, P.O. Box 807
                            Monett, Missouri 65708


                NOTICE OF 2006 ANNUAL MEETING OF STOCKHOLDERS


 TO THE STOCKHOLDERS OF JACK HENRY & ASSOCIATES, INC.:

 PLEASE TAKE NOTICE  that the  2006 Annual  Meeting of  Stockholders of  Jack
 Henry &  Associates, Inc.,  a  Delaware corporation,  will  be held  in  the
 Company's Executive Conference  Center, lower  level (Building  J-7) at  the
 company headquarters, 663 Highway 60, Monett, Missouri, on Tuesday,  October
 31, 2006, 11:00 a.m., local time, for the following purposes:

 (1)  To elect seven (7) directors to serve until the 2007 Annual Meeting of
      Stockholders;

 (2)  To approve the Company's 2006 Employee Stock Purchase Plan: and

 (3)  To transact such other business as may properly come before the Annual
      Meeting and any adjournments thereof.

 The close of business on  September 22, 2006, has  been fixed as the  record
 date for the  Annual Meeting. Only  stockholders of record  as of that  date
 will be  entitled  to  notice  of  and to  vote  at  said  meeting  and  any
 adjournment or postponement thereof.

 The accompanying form of Proxy is solicited by the Board of Directors of the
 Company.  The  attached Proxy  Statement contains  further information  with
 respect to the business to be transacted at the Annual Meeting.

 ALL STOCKHOLDERS ARE INVITED TO ATTEND THE MEETING IN PERSON. WHETHER OR NOT
 YOU EXPECT TO ATTEND, PLEASE DATE AND SIGN THE ENCLOSED PROXY. IF YOU DECIDE
 TO ATTEND THE MEETING,  YOU MAY REVOKE  YOUR PROXY AND  VOTE YOUR SHARES  IN
 PERSON.

                      By Order of the Board of Directors


                      Janet E. Gray
                      Secretary

 Monett, Missouri
 September 29, 2006


                              TABLE OF CONTENTS


      Voting.................................................        1

      Stock Ownership of Certain Stockholders................        2

      Election of Directors (Proposal 1).....................        4

      Corporate Governance...................................        5

      Audit Committee Report.................................        8

      Executive Officers and Significant Employees...........        9

      Certain Relationships and Related Transactions.........       10

      Section 16(a) Beneficial Ownership Reporting Compliance       10

      Executive Compensation.................................       10

      Equity Compensation Plan Information...................       12

      Compensation Committee Report..........................       13

      Company Performance....................................       15

      Approval of the Company's 2006 Employee Stock Purchase
        Plan (Proposal 2)....................................       15

      Independent Registered Public Accounting Firm..........       18

      Stockholder Proposals..................................       19

      Cost of Solicitation and Proxies.......................       19

      Financial Statements...................................       20

      Other Matters..........................................       20

          Exhibit A - Audit Committee Charter................       20

          Exhibit B - Jack Henry & Associates, Inc.
            2006 Employee Stock Purchase Plan................       25



                        JACK HENRY & ASSOCIATES, INC.
                         663 Highway 60, P.O. Box 807
                            Monett, Missouri 65708

                               PROXY STATEMENT
                 FOR THE 2006 ANNUAL MEETING OF STOCKHOLDERS
                     To Be Held Tuesday, October 31, 2006


 This Proxy Statement and the enclosed  proxy card (the Proxy) are  furnished
 to the stockholders of Jack Henry & Associates, Inc., a Delaware corporation
 (the Company),  in  connection  with the  solicitation  of  Proxies  by  the
 Company's Board  of  Directors  for  use  at  the  2006  Annual  Meeting  of
 Stockholders, and  any  adjournment  or  postponement  thereof  (the  Annual
 Meeting), to be  held in the  Company's Executive  Conference Center,  lower
 level (Building J-7) at  the company headquarters,  663 Highway 60,  Monett,
 Missouri,  at  11:00 a.m.,  local time,  on Tuesday,  October 31, 2006.  The
 mailing of this Proxy Statement, the Proxy, the Notice of Annual Meeting and
 the accompanying 2006 Annual Report to Stockholders is expected to  commence
 on or about September 29, 2006.

 The Board  of Directors  does not  intend to  bring any  matters before  the
 Annual Meeting except those indicated in the Notice and does not know of any
 matter which  anyone else  proposes  to present  for  action at  the  Annual
 Meeting.  If  any other  matters properly  come before  the Annual  Meeting,
 however, the persons named in the accompanying form of Proxy, or their  duly
 constituted substitutes,  acting  at  the Annual  Meeting,  will  be  deemed
 authorized to vote  or otherwise  to act  thereon in  accordance with  their
 judgment on such matters.

 If the enclosed Proxy is properly  executed and returned prior to voting  at
 the Annual  Meeting,  the  shares  represented  thereby  will  be  voted  in
 accordance with the instructions marked  thereon.  Each proposal,  including
 the election of directors, will require  the affirmative vote of a  majority
 of the shares of  common stock voting in  person or by  Proxy at the  Annual
 Meeting.

 Any stockholder executing a Proxy retains the power to revoke it at any time
 prior to  the voting  of the  Proxy.  It may  be  revoked by  a  stockholder
 personally appearing at the Annual Meeting  and casting a contrary vote,  by
 filing an instrument of revocation with the Secretary of the Company, or  by
 the presentation at the Annual Meeting of a duly executed later dated Proxy.


                                    VOTING

 At the 2006 Annual Meeting, Stockholders will consider and vote upon:

 (1) The election of seven (7) directors

 (2) Approval of the Company's 2006 Employee Stock Purchase Plan; and

 (3) Such other matters as may properly come before the Annual Meeting.

 Only stockholders of record at the close of business  on September 22, 2006,
 the record date for  the Annual Meeting,  are entitled to  notice of and  to
 vote at such meeting.

 The Company's  authorized capital  stock currently  consists of  250,000,000
 shares of common  stock, par value  $.01 per share  (the Common Stock),  and
 500,000 shares of preferred stock, par value $1.00 per share (the  Preferred
 Stock).  As of August 18, 2006, there were 91,219,608 shares of Common Stock
 outstanding and no shares of Preferred Stock outstanding.  At such date, our
 executive officers and  directors were entitled  to vote, or  to direct  the
 voting of 11,113,037 shares of Common Stock, representing 12% of the  shares
 entitled to vote at  the 2006 Annual Meeting.  Unless  otherwise  specified,
 all share numbers  and other share  data have been  adjusted to reflect  all
 prior stock splits.

 All shares represented by Proxy and all Proxies solicited hereunder will  be
 voted in  accordance  with  the  specifications  made  by  the  stockholders
 executing such Proxies. If a stockholder does not specify how a Proxy is  to
 be voted, the shares represented thereby will be voted: (1) FOR the election
 as directors of the seven (7)  persons nominated by the Board of  Directors;
 and (2) FOR the approval of the Company's 2006 Employee Stock Purchase Plan;
 and (3) upon other matters that may properly come before the Annual Meeting,
 in accordance  with the  discretion of  the  persons to  whom the  Proxy  is
 granted.

 Each share  of our  Common Stock  outstanding  on the  record date  will  be
 entitled to one vote on each matter. The seven (7) nominees for election  as
 directors who  receive  the  most votes  "for"  election  will  be  elected.
 Approval of the Company's 2006 Employee Stock Purchase Plan will require  an
 affirmative vote of the  majority of the shares  of Common Stock present  or
 represented at the annual meeting.

 For the  election of  directors,  withheld votes  do  not affect  whether  a
 nominee has received  sufficient votes  to be  elected. For  the purpose  of
 determining whether the  stockholders have approved  matters other than  the
 election  of  directors,  abstentions  are  treated  as  shares  present  or
 represented and voting,  so abstaining  has the  same effect  as a  negative
 vote. Shares held  by brokers that  do not have  discretionary authority  to
 vote on a particular matter and  that have not received voting  instructions
 from their customers are not counted or deemed to be present or  represented
 for the  purpose  of determining  whether  stockholders have  approved  that
 matter, but they are counted as  present for the purpose of determining  the
 existence of a  quorum at  the annual meeting.  Please note  that banks  and
 brokers that have not received voting instructions from their clients cannot
 vote on their clients' behalf on  "non-routine" proposals, such as  approval
 of the  Company's 2006  Employee Stock  Purchase Plan,  but may  vote  their
 clients' shares on the election of directors.


                   STOCK OWNERSHIP OF CERTAIN STOCKHOLDERS

 The following table sets forth information as of August 18, 2006, concerning
 the equity  ownership of  (a) those  individuals  who are  known to  be  the
 beneficial owners, as defined in Rule  13d-3 of the Securities Exchange  Act
 of 1934, of 5% or more of the Company's Common Stock, (b) the directors, (c)
 the executive officers named in the  Summary Compensation Table and (d)  all
 of our directors and executive officers as a group:


                                      Number of Shares     Percentage of Shares
 Title of Class  Beneficial Owner    Beneficially Owned (1)   Outstanding (1)
 --------------  ------------------- ----------------------   ---------------

 $.01 par value  T. Rowe Price           12,500,850                13.7%
 Common Stock    Associates, Inc              (2)
                 100 E Pratt St
                 Baltimore, MD

                 Michael E. Henry,        6,959,865                 7.6%
                 Vicki Jo Henry               (3)
                 and JKHY Partners
                 663 Highway 60
                 Monett, MO

                 Kayne Anderson           6,178,725                 6.8%
                 Rudnick Investment           (4)
                 Management, LLC
                 1800 Ave of the
                 Stars, 2nd Flr
                 Los Angeles, CA

                 Jerry D. Hall            2,434,158                 2.7%
                                             (5)

                 John W. Henry            1,004,727                 1.1%

                 Tony L. Wormington         657,570                  *
                                             (6)

                 James J. Ellis             490,000                  *
                                             (7)

                 John F. Prim               392,219                  *
                                             (8)

                 Kevin D. Williams          204,573                  *
                                             (9)

                 Marguerite P.
                 Butterworth                116,413                  *

                 Craig R. Curry              75,088                  *
                                             (10)

                 Mark S. Forbis              53,748                  *
                                             (11)

                 Wesley A. Brown             48,000                  *

                 Joseph J. Maliekel          28,135                  *
                                             (12)

                 All directors and       12,464,496                13.7%
                 executive officers as       (13)
                 a group (12 persons)

      * Less than 1%

  (1) Information is set forth as of August 18, 2006.  The persons  named  in
      the table have  sole voting and  investment power with  respect to  all
      shares of Common Stock shown as  beneficially owned by them, except  as
      noted below. With respect to shares  held in the Company's 401(k)  Plan
      (the "Retirement  Plan"), a  participant has  the right  to direct  the
      disposition of shares allocated to his account.

  (2) According to a  Schedule 13G filed  February 14, 2006,  T.  Rowe  Price
      Associates, Inc. has sole voting power with respect to 2,129,500 shares
      and sole dispositive power with respect to 12,500,850 shares.

  (3) Reflects information in filings with the SEC  by Michael E. Henry,  his
      sister Vicki  Jo Henry  and JHKY  Partners, their  family  partnership.
      Michael E. Henry separately may be deemed to beneficially own 6,959,865
      shares, including 213,347 shares held in  the Michael E. Henry  Annuity
      Trust, 2,218 shares allocated to  his Retirement Plan account,  400,000
      shares currently acquirable by  exercise of outstanding stock  options,
      3,190,200 shares  held by  JKHY Partners,  2,554,100 shares  held in  a
      living trust  and  600,000 shares  held  by the  Henry  Family  Limited
      Partnership, both established by his mother, Eddina F. Mackey.  Michael
      E. Henry may be deemed to share beneficial ownership in the shares held
      by JKHY Partners, by the Eddina F. Mackey Trust and by the Henry Family
      Limited Partnership because he  has been granted  proxies to vote  such
      shares. Vicki Jo Henry does not  beneficially own any shares of  common
      stock in her individual capacity and her business address is 6851 South
      Holly Circle,  Suite  270,  Englewood, Colorado,  80112.  The  business
      address of  Michael E.  Henry and  JKHY Partners  is reflected  in  the
      table.

  (4) According to a  Schedule  13G  filed  February 2, 2006, Kayne  Anderson
      Rudnick Investment  Management, LLC  has  sole voting  and  dispositive
      power with respect to these shares.

  (5) Includes 193,866 shares beneficially owned by his wife.

  (6) Includes 130,000 shares  that are  currently acquirable by exercise  of
      outstanding stock options and 33,575 shares held in the Retirement Plan
      for Mr. Wormington's account.

  (7) Includes  190,000 shares that are  currently acquirable by exercise  of
      outstanding stock options.

  (8) Includes 350,000 shares  that are  currently acquirable by exercise  of
      outstanding stock options and 14,996 shares held in the Retirement Plan
      for Mr. Prim's account.

  (9) Includes 190,000 shares that  are  currently acquirable by exercise  of
      outstanding stock options and 7,408 shares held in the Retirement  Plan
      for Mr. Williams' account.

 (10) Includes 13,334 shares that are  currently acquirable  by  exercise  of
      outstanding stock  options,  53,758  shares  beneficially owned  by his
      minor children and 7,996 shares held  in trust for a family member  for
      which Mr. Curry serves as trustee.

 (11) Includes 50,000 shares that are  currently acquirable  by  exercise  of
      outstanding stock options and 2,798 shares held  in the Retirement Plan
      for Mr. Forbis' account.

 (12) Includes  28,125  shares  that  are currently acquirable by exercise of
      outstanding stock options.

 (13) Includes   1,351,459   shares  that  are  currently  acquirable   under
      outstanding  stock  options,  and  60,995 shares held in the Retirement
      Plan for the accounts of the executive officers.



                                  PROPOSAL 1
                            ELECTION OF DIRECTORS

 Procedure

 At the meeting,  the stockholders  will elect  seven (7)  directors to  hold
 office for one-year terms ending at the 2007 Annual Meeting of  Stockholders
 or until their successors are elected and qualified. The Board of  Directors
 has nominated the Company's  seven (7) current  directors for reelection  at
 the Annual Meeting.

 The stockholders are entitled to one vote per share on each matter submitted
 to vote at any meeting of the Stockholders. Unless contrary instructions are
 given, the persons  named in the  enclosed Proxy or  their substitutes  will
 vote "FOR" the election of the nominees named below.

 Each of the  nominees has consented  to serve as  director. However, if  any
 nominee at  the  time  of  election  is unable  to  serve  or  is  otherwise
 unavailable for election, and as a  result other nominees are designated  by
 the Board of  Directors, the persons  named in the  enclosed Proxy or  their
 substitutes intend to vote for the election of such designated nominees.

 Nominees For Election

 The directors and nominees for election as directors of the Company, as well
 as certain information about them, are as follows:

 Name                 Position with Company                   Director Since
 ----                 ---------------------                   --------------
 Michael E. Henry     Chairman and Director                        1986

 John W. Henry        Vice Chairman, Senior Vice                   1977
                      President and Director

 Jerry D. Hall        Executive Vice President and                 1977
                      Director

 James J. Ellis       Director                                     1985

 Joseph J. Maliekel   Director                                     2002

 Craig R. Curry       Director                                     2004

 Wesley A. Brown      Director                                     2005


 The following information relating to  the Company's directors and  nominees
 for director, all  of whom are  United States citizens,  is with respect  to
 their principal occupations and positions during the past five years:

 Michael E. Henry, age 45, Chairman of the Board and Director. Mr. Henry, the
 son of John W. Henry and a director of the Company since 1986, has served as
 Chairman of the Board  since 1994 and Chief  Executive Officer from 1994  to
 June 2004. He previously served as  Vice Chairman and Senior Vice  President
 from 1993 to 1994.  He  served as Manager  of Research and Development  from
 1983 to 1993. He joined the Company in 1979.

 John W. Henry, age  71, Vice Chairman, Senior  Vice President and  Director.
 Mr. Henry, a co-founder and principal stockholder of the Company, has served
 as Vice Chairman since 1994.  He previously served as Chairman of the  Board
 from 1977 through  1994.  He also has been  a director  since the  Company's
 incorporation in 1977.  He previously served as Chief Executive Officer from
 1977 through 1988 and as President until 1989.

 Jerry D. Hall, age  63, Executive Vice President  and Director. Mr. Hall,  a
 co-founder and principal stockholder of the Company, has served as Executive
 Vice President since 1994.  He previously served as Chief Executive  Officer
 from 1990 through  1994.  He also has been  a director  since the  Company's
 incorporation in 1977.  He previously served as President from 1989  through
 1993 and as Vice President-Operations from 1977 through 1988.

 James J. Ellis, age 72, Director. Mr. Ellis, a director of the Company since
 1985, has been  Managing Partner  of Ellis/Rosier  Financial Services  since
 1992.  Mr. Ellis  served as  general  manager of  MONY  Financial  Services,
 Dallas, Texas, from 1979 until his retirement in 1992. Mr. Ellis also serves
 as a director of Merit Medical Systems, Inc.

 Joseph J. Maliekel, age 45, Director. Mr. Maliekel became a director of  the
 Company in December  2002.  He  is currently employed  as a  partner in  the
 public accounting firm BDO Seidman, LLP.  From 1999 through August 2006, Mr.
 Maliekel was employed  in various accounting  and  audit  positions with the
 Monsanto Company, most recently as Director of External Reporting.  Prior to
 joining Monsanto, Mr. Maliekel was a  Senior Manager with Deloitte &  Touche
 LLP, where he was employed from 1986 to  1999.  Mr. Maliekel is a  Certified
 Public Accountant.

 Craig R. Curry, age 45, Director. Mr. Curry, a director of the Company since
 March 2004, is  Chairman and CEO  of Central Bank,  Lebanon, Missouri,  with
 which he has been affiliated since 1983.

 Wesley A. Brown, age  52, Director.  Mr. Brown,  a  director of the  Company
 since his appointment in August 2005, is Managing Director and President  of
 St. Charles Capital, LLC in Denver, Colorado.  Prior to founding St. Charles
 Capital, Mr. Brown served as Managing Director of McDonald Investments, Inc.
 (2001-2004) and as  Executive Vice President  of the  Wallach Company,  Inc.
 (1991-2000).


                             CORPORATE GOVERNANCE

 The Company and its businesses are managed under the direction of the  Board
 of Directors.  The Board generally meets a minimum of four times during  the
 year, but has complete access to management throughout the year.

 Corporate Governance Guidelines

 The Board of  Directors has  adopted Corporate  Governance Guidelines  which
 address the following subjects:

      - The majority of the Board should be independent under relevant
        Nasdaq standards
      - Independent directors should not be compensated by the Company other
        than in the form of Director's fees (including director's
        compensatory stock options)
      - Membership on the Audit, Compensation and Governance Committees
        should be limited to independent directors
      - The Board should conduct an annual self-evaluation to determine
        whether it and its committees are functioning properly
      - Non-management directors may meet in executive session from time to
        time without members of management
      - The Chief Executive Officer shall provide an annual report to the
        Board on succession planning
      - The Governance Committee is responsible for determining skills and
        characteristics of Board candidates, and should consider factors
        such as independence, experience, strength of character, judgment,
        technical skills, diversity and age
      - The Board and its committees shall have the right at any time to
        retain independent counsel
      - Board members should not sit on more than 3 other boards
      - Board members are expected to attend all Annual Meetings of the
        Stockholders
      - Stockholders may communicate with the Board by submitting written
        comments to the Secretary for the Company, who will screen out
        inappropriate communications and forward same to the directors

 Nomination Policy

 The Board of Directors has also adopted a Nomination Policy with  respect to
 the consideration of  director candidates  recommended  by  stockholders.  A
 candidate submission from a  stockholder will be considered  at  any time if
 the following information is submitted to the Secretary of the Company:

      - The recommending stockholder's name and address, together with the
        number of shares, length of period held and proof of ownership
      - Name, age and address of candidate
      - Detailed resume of candidate, including education, occupation,
        employment and commitments
      - Description of arrangements or understandings between the
        recommending stockholder and the candidate
      - Statement describing the candidate's reasons for seeking election to
        the Board and documenting candidate's satisfaction of qualifications
        described in the Corporate Governance Guidelines
      - A signed statement from the candidate, confirming willingness to
        serve
      - If the recommending stockholder has been a beneficial holder of more
        than 5% of the Company's stock for more than a year, then it must
        consent to additional public disclosures by the Company with regard
        to the nomination

 The Secretary  of the  Company will  promptly forward  complying  nomination
 submissions to the  Chairman of the  Governance  Committee.  The  Governance
 Committee  may  consider  nominees  submitted  from  a  variety  of  sources
 including but not limited to stockholder  nominations.  If a vacancy  arises
 or the Board decides to expand  its membership, the Committee will  evaluate
 potential  candidates  from  all sources  and  will  rank them  by  order of
 preference  if  more  than  one  is identified  as  properly  qualified.   A
 recommendation will be made to the  Board by the Governance Committee  based
 upon qualifications, interviews, background checks and the Company's needs.


 Code of Conduct

 The members of the Board of Directors, as well as the executive officers and
 all other employees, are subject to and responsible for compliance with  the
 Jack Henry  Code of  Conduct.  The  Code  of Conduct  contains policies  and
 practices for the  ethical and lawful  conduct of our  business, as well  as
 procedures for confidential  investigation of complaints  and discipline  of
 wrongdoers.


 Governance Materials Available

 The Company has posted its significant corporate governance documents on its
 website at www.jackhenry.com/ir.corpinfo/.  There  you  will find copies  of
 the current Corporate Governance Guidelines, the Jack Henry Code of Conduct,
 the Compensation Committee Charter,  the Governance Committee Charter  (with
 attached  Nomination  Policy)  and  Audit  Committee  Charter,  as  well  as
 the  Company's  Certificate  of Incorporation  and  By-Laws.  Other investor
 relations materials are also  posted at www.jackhenry.com/ir, including  SEC
 reports, financial statements and news releases.


 The Board of Directors And Its Committees

 The Board of Directors held four  meetings during the last fiscal year.  The
 Board has  determined  that  four  of  its  seven  members,  Messrs.  Ellis,
 Maliekel, Curry, and Brown are independent directors under applicable Nasdaq
 standards.  The Board maintains an  Audit Committee of which Messrs.  Ellis,
 Maliekel, Brown and Curry are members.  The Board has determined that Joseph
 Maliekel is an audit committee financial  expert and that he is  independent
 as that  term  is  used  in  Item 7(d)(3)(iv)  of  Schedule  14A  under  the
 Securities Exchange Act of  1934.  The Board  also maintains a  Compensation
 Committee and a Governance Committee with Messrs. Ellis, Maliekel and  Curry
 as members of each  committee.  All members  of the Audit, Compensation  and
 Governance Committees are independent directors.  Each director attended  at
 least 75% of all meetings  of the Board of  Directors and all committees  on
 which they served.  The independent  directors met in one Executive  Session
 without management present during the last fiscal year.

 The Compensation  Committee establishes  and  reviews the  compensation  and
 benefits of  the Executive  Officers, evaluates  the performance  of  senior
 executive officers, considers incentive compensation plans for our employees
 and  carries  out  duties  assigned  to  the  Committee  under  our   equity
 compensation plans  and  employee  stock  purchase  plan.  The  Compensation
 Committee operates under a written charter adopted by the Board.

 The  Governance  Committee  identifies,  evaluates  and  recruits  qualified
 individuals to  stand for  election to  the Board  of Directors,  recommends
 corporate governance policy  changes and evaluates  Board  performance.  The
 Governance Committee also  operates under a  charter adopted  by the  Board.
 The Governance Committee will consider nominees recommended by stockholders,
 provided such recommendations are made in accordance with the procedures set
 forth in  the  "Governance  Committee Nomination  Policy"  attached  to  its
 charter, discussed in greater detail in "Corporate Governance," above.

 The Audit Committee  selects and retains  the independent registered  public
 accounting firm,  reviews  the scope  and  results  of the  audit  with  the
 independent  registered  public  accounting  firm  and  management,  reviews
 critical accounting policies and practices, reviews and evaluates our  audit
 and control functions, reviews and pre-approves retention of the independent
 registered public accounting firm for any audit, audit related and non-audit
 services, reviews and approves all material related party transactions,  and
 regularly reviews regulatory compliance  matters, including our  outsourcing
 services and business  recovery operations.  The  Audit  Committee  operates
 under a written Audit Committee Charter.

 The Audit Committee met eight times, the Compensation Committee met once and
 the Governance Committee met once during the last fiscal year.


 Directors Compensation

 The directors who are  employed by the Company  do not receive any  separate
 compensation for  service  on  the Board  of  Directors.  Each  non-employee
 director receives annual compensation  of $25,000 per  year plus $2,500  for
 attending each Board of Directors meeting.  Audit Committee members  receive
 $1,500 for  each  in-person Audit  Committee  meeting and  $1,000  for  each
 telephone Audit  Committee  meeting  attended.  Governance and  Compensation
 Committee  members  receive  $600  for  each  in-person  Committee   meeting
 attended.  To compensate for additional time spent on Committee maters,  the
 chairmen of  the Audit,  Compensation and  Governance Committees  receive  a
 premium of 50%  of the standard  attendance fee for  each Committee  meeting
 that they chair.  Each non-employee director is also reimbursed for  out-of-
 pocket expenses incurred in attending all Board and committee meetings.

 Under the 2005 Non-Qualified Stock Option Plan each non-employee director is
 compensated by the annual grant of  non-statutory stock options to  purchase
 10,000 shares of Common Stock, subject to an overall grant limitation  under
 the plan of 100,000 shares to each individual director.


                            AUDIT COMMITTEE REPORT

 The Audit  Committee  of  the Company's  Board  of  Directors  is  currently
 composed of four independent directors.  The Board has determined that Audit
 Committee member Joseph J. Maliekel is a financial expert under relevant SEC
 standards because  of his extensive accounting and auditing experience.  The
 Board  of  Directors  and  the  Audit  Committee  believe  that  the   Audit
 Committee's current member composition satisfies  the rules of the  National
 Association of  Securities  Dealers, Inc.  (the  "NASD") that  govern  audit
 committee  composition,  including  the  requirement  that  audit  committee
 members all be "independent directors" as that term is defined by NASD  Rule
 4200(a)(15).

 The Audit Committee operates under a written charter adopted by the Board of
 Directors, a copy of which is attached to this Proxy statement as Exhibit A.
 The  Charter  requires  the  Audit  Committee  to  oversee  and  retain  the
 independent registered public accounting firm, pre-approve the services  and
 fees  of  the  independent  registered  public  accounting  firm,  regularly
 consider critical accounting  policies of  the Company,  review and  approve
 material related  party transactions,  receive  reports from  the  Company's
 Compliance Officer, and  establish procedures  for receipt  and handling  of
 complaints  and  anonymous  submissions  regarding  accounting  or  auditing
 matters.  The charter also contains the commitment of the Board of Directors
 to provide funding  and support for  the operation of  the Audit  Committee,
 including funding  for independent  counsel for  the Committee  if the  need
 arises.

 The role of the Audit Committee is to  assist the Board of Directors in  its
 oversight of the Company's financial reporting process.  Management has  the
 primary duty  for  the  financial  statements  and  the  reporting  process,
 including  the  systems of  internal controls.  The  independent  registered
 public accounting firm is responsible  for auditing the Company's  financial
 statements and expressing an  opinion as to  their conformity to  accounting
 principles generally accepted in the United States.

 In the  performance  of its  oversight  function, the  Audit  Committee  has
 reviewed and discussed with management and the independent registered public
 accounting  firm  the  Company's audited  financial  statements.  The  Audit
 Committee  also  has  discussed  with  the  independent  registered   public
 accounting firm  the  matters  required to  be  discussed  by  Statement  on
 Auditing Standards No. 61 relating  to communication with audit  committees.
 In  addition,  the  Audit  Committee  has  received  from  the   independent
 registered  public  accounting  firm  the  written  disclosures  and  letter
 required  by  Independence  Standards  Board  Standard  No.  1  relating  to
 independence discussions  with  audit  committees, has  discussed  with  the
 independent registered public  accounting firm their  independence from  the
 Company and  its  management, and  has  considered whether  the  independent
 registered public accounting firm's provision  of non-audit services to  the
 Company is compatible with maintaining the firm's independence.

 The Audit  Committee discussed  with  the Company's  independent  registered
 public accounting  firm the  overall scope  and plans  for their  respective
 audits.  The  Audit  Committee meets  with the  internal  auditors  and  the
 independent registered public accounting  firm, with and without  management
 present, to discuss the results of their examinations, their evaluations  of
 the Company's internal  controls and the  overall quality  of the  Company's
 financial reporting.  These meetings without management present are held  at
 least once each year, and were held twice in the fiscal year just ended.

 In reliance on  the reviews  and discussions  referred to  above, the  Audit
 Committee recommended to the Board of Directors, and the Board has approved,
 that the Company's audited financial statements be included in the Company's
 2006 Annual Report to  Shareholders and Annual Report  on Form 10-K for  the
 year ended  June  30, 2006  for  filing  with the  Securities  and  Exchange
 Commission.

       James J. Ellis, Joseph J. Maliekel, Craig R. Curry and Wesley A. Brown
                                 Members of the Audit Committee



                 EXECUTIVE OFFICERS AND SIGNIFICANT EMPLOYEES

 The executive officers and significant employees of the Company, as well as
 certain biographical information about them, are as follows:


                                                           Officer/Significant
            Name              Position with Company           Employee Since
 -------------------------    -------------------------       --------------
 Michael E. Henry             Chairman of the Board               1983

 John F. Prim                 Chief Executive Officer             2001

 Tony L. Wormington           President                           1998

 John W. Henry                Vice Chairman and Senior            1977
                              Vice President

 Jerry D. Hall                Executive Vice President            1977

 Kevin D. Williams            Chief Financial Officer             2001
                              and Treasurer

 Mark S. Forbis               Vice President                      2006


 The following information is provided  regarding the executive officers  and
 significant employees not already described herein,  all of whom are  United
 States citizens:

 John F. Prim, age 51, Chief Executive Officer. Mr. Prim has served as  Chief
 Executive Officer since July 1, 2004.  He served as President  from  January
 2003 to July 2004 and as Chief  Operating Officer from July 2001  to January
 2003. Mr. Prim joined the Company in 1995 as part of the acquisition of  the
 Liberty  division  of Broadway  &  Seymour, Inc.  He  previously  served  as
 General Manager of the E-Services Division  from July 2000 to June 2001  and
 as General Manager of the OutLink Services Division from 1995 to 2000.

 Tony L.  Wormington,  age  44,  President.  Mr.  Wormington  has  served  as
 President  since  July 1, 2004.  He previously  served  as  Chief  Operating
 Officer from January 2003 to June 2004 and as a Vice President from 1998  to
 2002.  Mr. Wormington joined the Company in 1980 and served as Research  and
 Development Manager from 1993 to December 2002.

 Kevin D. Williams,  age  47,  Chief  Financial  Officer  and  Treasurer.  In
 January 2001, Mr. Williams was appointed by the Board of Directors to  serve
 as Chief Financial  Officer  and  Treasurer of  the Company.  He  previously
 served as Controller of the Company since joining the Company in 1998.

 Mark S. Forbis, age  43, Vice President  and  Chief Technology Officer.  Mr.
 Forbis  has  served  as  Chief Technology Officer  since  May 5, 2006 and as
 General Manager of Technology Services since  December of  2002.  Mr. Forbis
 joined the  Company  in  1988 and  has  served  in a  number  of  positions,
 including Manager  of Imaging  from 1994  to his  appointment as  a  General
 Manager in 2002.


                CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS

 Director Craig  R. Curry  is  Chairman and  CEO  of Central  Bank,  Lebanon,
 Missouri.  Mr. Curry and his family own a substantial portion of the  equity
 interests in Central Bank.  Central Bank  is a  customer of the Company  and
 during the year ended June 30, 2006, it paid $235,166.98 to the Company  for
 software licenses and software maintenance services.


           SECTION 16(a) BENEFICIAL OWNERSHIP REPORTING COMPLIANCE

 The Company is required  to identify any director,  officer or greater  than
 ten percent beneficial owner who failed  to timely file with the  Securities
 and Exchange  Commission  a  report required  under  Section  16(a)  of  the
 Securities Exchange  Act  of  1934 relating  to  ownership  and  changes  in
 ownership of the  Company's common stock.  The required  reports consist  of
 initial statements on  Form 3, statements  of changes on  Form 4 and  annual
 statements on Form 5.

 To the Company's knowledge, based solely on its review of the copies of such
 forms received by it, the Company believes that during the fiscal year ended
 June 30, 2006, all required Section  16(a) filings were filed timely  except
 for one  Form 4  reporting a  single  transaction that  was filed  late  for
 Director James J. Ellis due to a clerical error.


                            EXECUTIVE COMPENSATION

 The following  table  sets forth  certain  information with  regard  to  the
 compensation paid to the Chief Executive  Officer, the Company's other  four
 most highly compensated current executive officers and one retired executive
 officer for the three years ended June 30, 2006.


 Summary Compensation Table

                                       Annual Compensation      Long-Term Compensation
                                   ---------------------------  ----------------------
                                                                   Shares   Restricted
                                                                 Underlying   Stock     All Other
                                                                   Options    Awards  Compensation
 Name and Principal Position       Year     Salary    Bonus (1)      (2)       (3)         (4)
 ---------------------------       ----    --------   --------     -------    ------  ------------
                                                                   
 John F. Prim                      2006   $ 450,000  $     800           -         -     $   5,000
   Chief Executive Officer         2005     450,000        800           -         -         5,000
                                   2004     340,000        800           -         -         5,000

 Tony L. Wormington                2006     400,000        800           -         -         5,000
   President                       2005     400,000        800           -         -         5,000
                                   2004     291,667        800           -         -         5,000

 Kevin D. Williams                 2006     350,000        800           -         -         5,000
   Treasurer and                   2005     350,000        800           -         -         5,000
   Chief Financial Officer         2004     203,333        800           -         -         5,000

 Mark S. Forbis                    2006     200,000        800           -         -         5,000
   Vice President and              2005     163,750        800           -         -         5,000
   Chief Technology Officer        2004     149,167        800           -         -         5,000

 Marguerite P. Butterworth (5)     2006     146,000     50,800           -         -         5,000
   Vice President                  2005     139,333        800           -         -         5,000
                                   2004     131,167        800           -         -         5,000

 Jerry D. Hall                     2006     102,400        800           -         -         5,000
   Executive Vice President        2005     102,400        800           -         -         4,733
                                   2004     102,400        800           -         -         5,000


  (1) Reflects Holiday Bonus  of $800 paid to all full-time employees of  the
      Company in each of the three  most recent fiscal years.  In regards  to
      Messrs. Prim, Wormington, Williams, and Mrs. Butterworth, these Holiday
      Bonuses were erroneously  not reported in  fiscal year  2005, and  were
      reported as part of salary in 2004.  As to Mr. Hall, the Holiday  Bonus
      was previously reported as part of salary in both fiscal years 2005 and
      2004.

  (2) Options were not granted to  any of the executive officers  during  the
      2004, 2005, and 2006 fiscal years.

  (3) The  Company's  2005  Restricted  Stock  Plan   was   approved  by  the
      stockholders  at  the  Annual  Meeting  held  on  November 1, 2005.  No
      awards of restricted stock were made  to any of the executive  officers
      during the fiscal year ended June 30, 2006.

  (4) Corporate 401(k) matching contribution  for each executive  officer  in
      each period. These amounts have been reported as  bonus in prior years.

  (5) Ms. Butterworth retired on June 30, 2006.  2006 Bonus includes  $50,000
      retirement bonus.


 Following  is  information  with  respect  to  stock  options granted to and
 exercised by the executive officers named in the Summary  Compensation Table
 during  the  fiscal  year  ended  June 30, 2006, together with the number of
 options outstanding as of such date. Data, as appropriate, has been adjusted
 for stock splits.


 Option Grants In Fiscal 2006

 The Company did not grant options to any of the executive officers named in
 the Summary Compensation Table during the fiscal year ended June 30, 2006.




 Aggregated Option Exercises In Fiscal 2006 And June 30, 2006 Option Values

                                                   Number of Shares                Value of
                       Shares                   Underlying Unexercised     Unexercised In-the-Money
                     Acquired On   Value          Options at 6/30/06          Options at 6/30/06
 Name                 Exercise   Realized     Exercisable  Unexercisable  Exercisable  Unexercisable
 ------------------   --------   --------     -----------  -------------  -----------  -------------
                                                                       
 John F. Prim          35,000   $ 534,469        350,000               -   $1,029,406              -

 Tony L. Wormington    60,000     991,268        130,000               -    1,097,550              -

 Kevin D. Williams          -           -        190,000               -    1,902,775              -

 Mark S. Forbis         5,000      87,354         50,000               -      199,600              -

 Marguerite P.
 Butterworth           50,000     341,712              -               -            -              -

 Jerry D. Hall              -           -              -               -            -              -



 Agreements With Executive Officers

 The Company has no employment contracts with any of its executive officers.

 In August of 2005, the Company entered into Termination Benefits  Agreements
 with each  of Messrs.  Prim, Wormington  and Williams,  and one  other  non-
 executive officer  of the  Company.  Under  each  of these  Agreements,  the
 executive will receive two  times his base salary  if terminated within  the
 first 12 months after  a change in control  or one time  his base salary  if
 terminated during the second 12 month period following a change in  control.
 Change in control is defined as an acquisition  of 35% or more of the  stock
 of the Company, termination of service of  a majority of the members of  the
 Board of Directors during any two year period for reasons other than  death,
 disability or retirement, approval by the shareholders of liquidation of the
 Company or  sale  of  50%  or  more  of  its  assets,  or  approval  by  the
 shareholders of a merger  or consolidation if  the Company shareholders  own
 less than 50%  of the combined  voting power of  the resulting  corporation.
 The termination benefits will be paid upon any termination of the  executive
 during the two years following any change in control unless the  termination
 occurs by reason of the executive's death, disability, retirement, or if the
 termination is for cause.  The Termination Benefits Agreements have terms of
 two years, will  automatically renew thereafter  for two  year terms  unless
 terminated by  the  Board  of  Directors, and  the  Agreements  may  not  be
 terminated following any change in control.


                     EQUITY COMPENSATION PLAN INFORMATION

 The following table sets forth information as of June 30, 2006 with respect
 to the Company's equity compensation plans under which our Common Stock is
 authorized for issuance:

                                                            Number of securities
                                                           remaining available
                                                           for future issuance
                                                               under equity
                           Number of         Weighted-         compensation
                        securities to         average        plans (excluding
                        be issued upon     exercise price      securities in
                          exercise of      of outstanding    the first column
                      outstanding options     options         of this table)
                      -------------------  -------------- --------------------

 Equity Compensation
 Plans approved by
 security holders:

 1995 Non-Qualified           664,167           $15.79                   0
 Stock Option Plan
 (Non-employee
 Directors)

 1996 Stock Option          7,016,226           $15.29           2,578,749
 Plan (Employees)

 2005 Restricted                    0            $0.00           3,000,000
 Stock Plan

 2005 Non-Qualified                 0            $0.00             700,000
 Stock Option Plan
 (Non-employee Directors)

 Equity Compensation           20,000           $16.88                   0
 Plan not approved
 by security holders
 (individual option
 contract)


                        COMPENSATION COMMITTEE REPORT

 The Company's  executive officer  compensation program  is administered  and
 reviewed by the Compensation Committee. The Compensation Committee  consists
 of three independent, non-employee  directors of the  Company. There was  no
 insider participation on the Compensation Committee.


 Compensation Philosophy

 The objectives of our executive officer compensation program are to:

        *  Focus executives on achieving consistent earnings growth;

        *  Encourage continuation of JHA's entrepreneurial spirit;

        *  Attract and retain highly qualified and motivated executives; and

        *  Encourage esprit de corps and reward outstanding performance.

 In meeting the foregoing objectives, the Compensation Committee strives  for
 the  interests  of  management  and  stockholders  to  be  the  same  -  the
 maximization  of  stockholder  value.   The  components  of  the   executive
 compensation program which are employed by the Committee to meet these goals
 include base salary, bonuses,  equity compensation and termination  benefits
 agreements.


 Salary

 Salaries are established annually by the Compensation Committee at levels to
 compensate for the position held and  contributions made by each  executive.
 Recommendations regarding  increases in  salary  are based  upon  subjective
 evaluations of each individual's performance and contribution.


 Bonus

 The Compensation Committee has recommended and the Board has adopted a bonus
 plan for our senior  executives.  Under the  2007 Executive Bonus Plan,  the
 Chief Executive  Officer,  President and  Chief  Financial Officer  will  be
 eligible for annual cash bonuses of up to 45% of their base salaries if  the
 Company achieves specific  growth in earnings  per share  during the  fiscal
 year  ending  June 30, 2007.  Under the  plan, bonuses  will be  paid to  an
 executive officer following  the end  of the  current fiscal  year  (July 1,
 2006 - June 30, 2007)  if earnings per share growth targets are achieved  by
 the Company.  No  bonus  is payable  to any  officer under  the plan  unless
 earnings per share  growth of at  least 14% is  achieved.  At  earnings  per
 share growth of 14%,  a bonus  of 7.5%  of base salary will  be payable.  If
 earnings per share increase by 15%, then a bonus of 20% of base salary  will
 be payable.  Increases in earnings per share above 15% will be rewarded with
 additional bonus, up  to a maximum  of 45% of  base salary  if earnings  per
 share increase 20% or more.


 Equity Compensation

 For many years, the Company used longer term employee incentives in the form
 of stock options.  Each of the executive officers continues to hold  options
 granted  in  prior  years.  Because  of  recent changes  in  the  accounting
 treatment of stock options, however, we  have determined that future  equity
 incentives will be  in the form  of restricted  stock.  In  2005, the  Board
 proposed and the stockholders  adopted our Restricted  Stock Plan, which  is
 intended to be the primary structure  for future equity incentive awards  to
 the executive officers  and  all  other employees  of  the Company  and  its
 subsidiaries.  We  believe  that  equity  awards help  focus  executive  and
 employee attention on managing the Company from the perspective of an  owner
 with an equity stake  in the business.  The  Compensation Committee has  the
 discretion to  grant  restricted  stock under  the  Plan  to  the  executive
 officers and to determine the terms  of the restrictions on granted  shares.
 No shares were  granted under the  Restricted Stock Plan  during the  fiscal
 year ending June 30, 2006.


 Termination Benefits Agreements

 In 2005, the Board authorized the Company to enter into Termination Benefits
 Agreements with certain executives.  Recognizing that any future  threatened
 or actual change  in control such  as an acquisition  or merger could  cause
 disruption and harm to  the Company in  the event of  resulting loss of  key
 executives, the Termination Benefits Agreements  are intended to provide  an
 incentive to retain  the specified executives  through the  resolution of  a
 threat or through a change in control.  Under the agreements, each of  these
 executives will receive two times his  base salary if terminated within  the
 first 12 months after  a change in control  or one time  his base salary  if
 terminated during the second 12 month period following a change in  control.
 Each of the Termination  Benefits Agreements has a  term of two years,  will
 automatically  renew  thereafter  for  successive  two  year  terms   unless
 terminated by the Board  of Directors, and may  not be terminated  following
 any change in control.  The Agreements specify that  they  do not confer  on
 the executives any  right to continued  employment  and  shall not interfere
 with the right of the Company to terminate the executives at any time.


 Summary

 In employing  the  foregoing  elements  of  compensation,  the  Compensation
 Committee considers  the  experience, prior  compensation  levels,  personal
 performance, number  and  value of  previously  granted options,  and  other
 subjective factors relating to each individual in combination with objective
 Company and individual objectives.  We seek to optimize the balance  between
 base salary, short-term and long-term incentives.


 Mr. Prim's Compensation

 The base annual salary of  Chief  Executive  Officer Jack Prim was increased
 to  $468,000  in  August  of  2006 from the previous base of $450,000 set in
 July  of  2004.  Mr. Prim's compensation  for fiscal year 2007 is based upon
 available comparative information, subjective evaluation of his performance,
 comparison  with  other  management personnel  and  Company-wide  standards.
 Specific  performance  goals  were not  used  in setting  his  base  salary.
 Because the corporate net income growth goal of 20% was not achieved  during
 fiscal year 2006, no bonus was granted to Mr. Prim under the 2006  Executive
 Bonus Plan.  No  discretionary bonus, stock options  or other equity  awards
 were granted to Mr. Prim during our  2006 fiscal year.  The Company  entered
 into a Termination  Benefits Agreement  with  Mr. Prim effective  August 30,
 2005.

 The Compensation Committee, with the approval of the Board of Directors, has
 established a bonus plan for Mr. Prim for the current fiscal year under  the
 Company's 2007 Executive Bonus Plan. Under  this plan, Mr. Prim is  eligible
 to receive a cash bonus of  a percentage of his  base salary if the  Company
 achieves growth targets for  earnings per share for  the fiscal year  ending
 June 30, 2007.  No  bonus is payable unless  the Company achieves growth  in
 earnings per share of at least 14% for  the year.  The bonus increases  from
 7.5% of base salary at 14% earnings per  share growth to 45% of base  salary
 if earnings per share grow by 20% or more.


 Limits on Deductibility

 The Compensation  Committee notes  that there  is a  $1,000,000 cap  on  the
 income tax  deduction which  may be  taken with  respect to  any  individual
 officer's  compensation.  While  current  cash  compensation  paid  to   our
 executive officers is substantially less than the cap, the ultimate value of
 outstanding stock  options  is  not now  known,  and  thus the  cap  may  be
 important in some future year. The cap has been considered by the  Committee
 and we  intend  to  take  the  steps  necessary  to  conform  the  Company's
 compensation structure  to comply  with the  cap if  the issue  arises in  a
 future period.

                        James J. Ellis, Joseph J. Maliekel and Craig R. Curry
                                 Members of the Compensation Committee




                             COMPANY PERFORMANCE

 The following graph  presents a comparison  for the  five-year period  ended
 June 30, 2006, of the market performance of the Company's common stock  with
 the S & P 500 Index and an index of peer companies selected by the Company:

 The following information depicts a line graph with the following values:


                        JKHY      Peer Group    S&P 500

              2001     100.00       100.00       100.00
              2002      54.13       108.90        82.01
              2003      58.32       109.10        82.22
              2004      66.41       123.92        97.93
              2005      61.04       127.39       104.12
              2006      66.20       142.91       113.11

 This comparison  assumes $100  was invested  on  July 1, 2001,  and  assumes
 reinvestments  of  dividends.  Total  returns  are calculated  according  to
 market capitalization of peer group members at the beginning of each period.
 Peer companies  selected  are  in  the  business  of  providing  specialized
 computer software, hardware and  related services to financial  institutions
 and other businesses.  Companies in  the peer group are Bisys Group,  Cerner
 Corp., Computer Science,  Efunds Corp., Euronet  Worldwide Inc., Fair  Isaac
 Corp., Fidelity National Financial, First Data  Corp., Fiserv Inc., John  H.
 Harland Company,  Marshall & Ilsley Corp.,  National Datacomputer Com,  Open
 Solutions Inc. and SEI Investments Company.


                                  PROPOSAL 2
         APPROVAL OF THE COMPANY'S 2006 EMPLOYEE STOCK PURCHASE PLAN

 Subject to the approval of the Company's stockholders at the Annual Meeting,
 the Board, on the recommendation of the Compensation Committee, has  adopted
 the Jack Henry  &  Associates, Inc. 2006 Employee Stock  Purchase Plan  (the
 "Plan").   The  Company's  existing  employee  stock  purchase  plan  became
 effective on January 1, 1996  and  will terminate upon approval of the Plan.
 The Plan is intended to qualify  as an "employee stock purchase plan"  under
 Section 423 of the Internal Revenue Code of 1986, as amended (the "Code").


 Summary of the Plan

 The following summary of the Plan is qualified in its entirety by  reference
 to the complete text thereof, which  is attached to this proxy statement  as
 Exhibit B.

 The purpose of  the Plan  is to  provide employees  of the  Company with  an
 opportunity to  purchase  shares  of the  Company's  Common  Stock,  thereby
 linking the interests of employees and stockholders.  One million shares  of
 the Common Stock are authorized for purchase under the Plan.  If the  number
 of issued shares of the Common Stock  increases or decreases due to a  stock
 split, reverse stock split, stock dividend, combination, reclassification or
 any other increase or decrease in the  number of shares of the Common  Stock
 without receipt  of  consideration by  the  Company, the  number  of  shares
 available for purchase under the Plan, and the price for any shares  subject
 to outstanding options, shall be proportionately adjusted.


 Administration

 The Plan is administered by the Board of Directors or a committee  appointed
 by the Board  which consists  of members  of the Board.  The  Board  or  the
 committee has full  and exclusive discretionary  authority to interpret  the
 provisions of the Plan, determine eligibility and adjudicate disputed claims
 under the Plan.


 Eligibility

 Employees of the Company, including employees of the Company's  wholly-owned
 subsidiaries and other subsidiaries as designated  by the Board (other  than
 stockholders who, immediately after the grant of any option under the  Plan,
 would own or have the right  to acquire 5% or  more of the Company's  common
 stock), are eligible to  participate under the Plan  if (i) their  customary
 employment with the Company is at least twenty hours per week and more  than
 five months in any calendar  year, and (ii) they  have been employed by  the
 Company  for  at  least  one  year.  Employees' eligibility is determined on
 the  enrollment  date  for each offering period.  The enrollment date is the
 first day  of  the applicable  offering  period.  As  of  September 1, 2006,
 approximately 2,875  employees were  eligible  to participate in  the  Plan.
 Eligible  employees  participate  in  the  Plan  by  filing  a  subscription
 agreement with the  Company at  least 10 days  prior to  an enrollment  date
 authorizing payroll deductions that accumulate during the offering period to
 purchase shares of the Company's common stock at a discount.


 Offering Periods

 Offering periods begin on  the first trading  day which is  on or after  the
 16th day of each calendar month, and end on the last trading day which is on
 or before the 15th day of the following calendar month.  A trading day is  a
 day on which  national stock exchanges  and the Nasdaq  system are open  for
 trading.  The Board of Directors can change the duration of offering periods
 for future offerings at  least 15 days prior  to the scheduled beginning  of
 the first offering period to be affected.


 Payroll Deductions

 Payroll deductions for participants begin on the first payday following  the
 enrollment day.  Participants select payroll deduction rates in whole dollar
 amounts or  whole percentage  of compensation,  not less  than $10  per  pay
 period, and not greater  than 10% of total  W-2 compensation during the  pay
 period.  The payroll deduction rate elected by a participant is  irrevocable
 during  the  offering  period,  and  remains  in  effect  until  changed  or
 terminated  by  the  participant.  Participants  may increase,  decrease  or
 discontinue their  payroll deductions  for  subsequent offering  periods  by
 filing a change  or withdrawal form  with the Company  at least 10  business
 days prior to an enrollment date.


 Purchase Price and Amount of Stock Purchased

 When a participant enrolls in the  Plan, the participant receives an  option
 to purchase  shares of  the Common  Stock on  the last  trading day  of  the
 offering period at 95% of the fair market  value of the shares on that  day.
 The number of shares a participant  will be able to purchase will  generally
 be equal to the payroll deductions during the offering period divided by the
 purchase price per share and will  include fractional shares (to the  fourth
 decimal place).  The Plan limits each participant's share purchases in order
 to stay within the Code's $25,000 per year purchase limitation (based on the
 fair market value of the  shares on the first  day of the offering  period).
 The fair market value of the  common stock for a given date is equal to  the
 closing sales price (or, if no sales were reported, the closing bid) for the
 immediately preceding trading day on The Nasdaq Stock Market, as reported in
 The Wall Street Journal or such other source as the Board deems reliable.


 Withdrawal

 A participant may terminate participation in the Plan as of the first day of
 any offering period by filing a change or withdrawal form with the  Company.
 The participant's payroll deductions  will continue through  the end of  the
 offering period  in which  the form  is  filed, and  those amounts  will  be
 applied to the purchase of shares of the Common Stock in accordance with the
 terms of the Plan.  As soon as administratively practicable thereafter,  the
 participant will receive a stock certificate for the number of whole shares,
 and a cash payment equal to the  fair market value of any fractional  share,
 credited to the participant under the Plan.


 Termination of Employment

 In the event of  a participant's termination of  employment for any  reason,
 including death, payroll  deductions will  be taken  from the  participant's
 final paycheck and applied to the purchase of shares of the Common Stock  in
 accordance  with  the  terms  of  the  Plan.  As  soon  as  administratively
 practicable  thereafter,  the   participant  (or,  in   the  event  of   the
 participant's death,  the participant's  beneficiary) will  receive a  stock
 certificate for the number of whole shares, and a cash payment equal to  the
 fair market value of any fractional share, credited to the participant under
 the Plan.


 Plan Amendments

 The Board  of  Directors  may amend  or  terminate  the Plan  at  any  time.
 However, amendments to the Plan to  increase the number of shares  available
 for purchase require stockholder approval.  Generally  no changes  affecting
 existing purchase rights  may be made  without the consent  of the  affected
 participants.  However, the Board may amend  the Plan in the event that  the
 Board determines  that the  ongoing  operation of  the  Plan may  result  in
 unfavorable financial accounting consequences.


 Certain Federal Income Tax Consequences

 Certain federal income tax rules applicable  to the Plan under the Code  are
 summarized below.  This summary does not discuss any local, state or foreign
 tax laws that may be applicable to any participant.

 The amount  which a  participant contributes  to  the Plan  through  payroll
 deduction is not  deductible  by  the participant.  A  participant does  not
 recognize income  at the  time an  option  to purchase  shares of  stock  is
 granted or exercised under the Plan.  However,  a participant may  recognize
 income upon disposition of those shares.

 If a participant disposes of any shares of stock acquired under the Plan  in
 a disqualifying  disposition, in  the taxable  year of  the disposition  the
 participant will recognize ordinary  income equal to the  excess of (1)  the
 fair market value of the shares on the  date of purchase (which is the  last
 trading day during the offering period  in which the shares are  purchased),
 over (2) the purchase price paid by  the participant  for those shares.  Any
 difference between the  fair market value  on the date  of purchase and  the
 proceeds from a sale of  the shares will be  treated as long-term or  short-
 term capital  gain  or  loss,  as applicable,  depending  on  how  long  the
 participant holds the shares  after the date of  purchase.  A  disqualifying
 disposition is any sale or other disposition of a share of stock within  two
 years after the date  of grant (which  is the first  trading  day during the
 offering period in which the option to  purchase the share  is granted).  In
 the taxable year  of a  disqualifying disposition,  the Company  may take  a
 deduction  equal  to  the  amount  of  ordinary  income  recognized  by  the
 participant.

 If a participant disposes  of any shares acquired  under the Plan more  than
 two years after the date of purchase, or upon the participant's death at any
 time while owning  the shares,  in the taxable  year of  the disposition  or
 death the participant will recognize ordinary income equal to the lesser  of
 (1) the  excess of  the fair  market value  of  the shares  on the  date  of
 disposition or death  over the purchase  price paid by  the participant  for
 those shares, or (2) 5% of the fair market  value of the shares on the  date
 of grant.  Any additional gain recognized upon disposition of the shares  in
 excess of the amount treated as ordinary income will be treated as long-term
 capital gain.  If the purchase price paid by the participant for the  shares
 exceeds the proceeds from their sale, the participant will not recognize any
 ordinary income, and the amount by which the purchase price exceeds the sale
 proceeds will be treated as a long-term capital loss.


 New Plan Benefits

 It is not possible to determine at this time the extent to which, if at all,
 the executive officers named in the Summary Compensation Table will elect to
 participate in the Plan.


 Vote Required

 Under Delaware law, the affirmative vote of the holders of a majority of the
 shares of the  Company's Common Stock  present in person  or represented  by
 proxy and entitled to vote at the annual meeting, a quorum being present, is
 necessary  for  the  approval of  the adoption of  the Plan.  The  aggregate
 number of shares for which a vote  "FOR," "AGAINST" or "ABSTAIN" is made  is
 counted for the  purpose of determining  the minimum  number of  affirmative
 votes required  for approval,  and  the total  number  of votes  cast  "FOR"
 approval is counted for the purpose of determining whether sufficient  votes
 are  received.  An  abstention from  voting  on a  matter by  a  stockholder
 present in person or represented by proxy and entitled to vote has the  same
 legal effect as a vote "AGAINST" the matter.

 THE BOARD OF DIRECTORS RECOMMENDS THAT  YOU VOTE "FOR" APPROVAL OF THE  JACK
 HENRY  &  ASSOCIATES,  INC.  2006  EMPLOYEE  STOCK  PURCHASE  PLAN.  PROXIES
 RECEIVED BY THE BOARD  OF DIRECTORS WILL  BE VOTED FOR  THE APPROVAL OF  THE
 ADOPTION OF THE PLAN  UNLESS STOCKHOLDERS SPECIFY IN  THEIR PROXY A VOTE  OF
 "AGAINST" OR "ABSTAIN".


                INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM

 Deloitte & Touche LLP served as the independent registered public accounting
 firm for the Company for the year  ended June 30, 2006. The Audit  Committee
 has not selected the independent registered  public accounting firm for  the
 current year, because the selection will not be made until after the  Annual
 Meeting of Stockholders.  Representatives of Deloitte & Touche are  expected
 to be present at the Annual Meeting with the opportunity to make a statement
 if they  desire to  do so  and to  be available  to respond  to  appropriate
 questions.


 Audit And Non-Audit Fees

 The following table presents fees  for professional audit services  rendered
 by Deloitte &  Touche for  the audit  of the  Company's annual  consolidated
 financial statements for the fiscal years  ended June 30, 2006 and 2005  and
 reviews of the financial statements included in the Company's Forms 10-Q for
 those fiscal years, the audit of the Company's assessment and  effectiveness
 of internal  control  over financial  reporting  under Section  404  of  the
 Sarbanes-Oxley Act  of 2002,  and fees  for other  services rendered  during
 those periods.

                                        2006              2005
                                     ---------         ---------
     Audit Fees                     $  520,972        $  305,500
     Audit-Related Fees (1)            917,867           493,692
     Tax Fees (2)                      197,389           173,134
     All Other Fees (3)                 11,286            37,000
                                     ---------         ---------
     Total Fees                     $1,647,514        $1,009,326

  (1) Audit-related fees for  2006 and 2005 included audits  of two  employee
      benefit plans, audits performed in accordance with SAS 70 and review of
      other SEC  filings.   SAS  70 reviews  are  conducted to  evaluate  the
      effectiveness of  operational controls  in various  regulated  business
      operations of  the  Company,  including  our  data  processing  service
      bureaus.

  (2) Tax Fees  for 2006  and  2005 included review of the Company's  federal
      and specific state  income tax  returns, assistance  with research  and
      development credits taken on  income tax returns,  review of other  tax
      credits  and  deductions  and review  of  the  Company's  health   care
      program plan documentation and related tax filings.

  (3) Other  fees  for 2006  and  2005 included services  provided to  review
      the Company's internal control documentation relative to Section 404 of
      the Sarbanes-Oxley Act of 2002.

 In making  its decision  to continue  to  retain Deloitte  & Touche  as  the
 Company's independent registered public accounting firm for the next  fiscal
 year, the Audit Committee will consider the above information to ensure that
 the  provision  of  non-audit  services  will  not  negatively  impact   the
 maintenance of the firm's independence.

 The Audit Committee has  in its Charter expressed  its policy governing  the
 engagement of the  Company's independent registered  public accounting  firm
 for audit and non-audit services.  Under the terms of the Charter, the Audit
 Committee is required to pre-approve all audit, audit related and  non-audit
 services performed by the Company's independent registered public accounting
 firm.  All non-audit  services  for 2006  were  pre-approved  by  the  Audit
 Committee.

 At the  beginning of  each fiscal  year, the  Audit Committee  reviews  with
 management and the independent registered  public accounting firm the  types
 of services  that are  likely to  be required  throughout  the  year.  Those
 services are comprised  of four categories:  audit  services,  audit-related
 services, tax services and all other permissible services.  The  independent
 registered public accounting firm  provides documentation for each  proposed
 specific service to  be provided.  At that time,  the  Audit Committee  pre-
 approves a list  of specific services  that may be  provided within each  of
 these categories, and sets fee limits for each specific service or  project.
 Management is then  authorized to engage  the independent registered  public
 accounting firm to  perform the pre-approved  services as needed  throughout
 the year, subject  to providing the  Audit Committee  with regular  updates.
 The Audit  Committee  reviews  all billings  submitted  by  the  independent
 registered public accounting firm  on a regular basis  to ensure that  their
 services  do  not exceed  pre-defined limits.  The  Audit Committee  or  its
 Chairman reviews and approves in advance, on a case-by-case basis, all other
 projects, services and fees  to be performed by  or paid to the  independent
 registered public accounting  firm.  The  Audit Committee  also approves  in
 advance any fees for pre-approved  services that exceed the  pre-established
 limits, as described above.


                            STOCKHOLDER PROPOSALS

 Stockholders who  intend to  present proposals  for inclusion  in the  proxy
 statement and form of proxy for the 2007 Annual Meeting of Stockholders must
 submit their proposals to the Company's Secretary on or before June 4, 2007.
 A shareholder who wishes to present  a proposal at the 2007 Annual  Meeting,
 but who does not request inclusion  in the proxy statement, must submit  the
 proposal to the Company's Secretary by August 22, 2007.


                       COST OF SOLICITATION AND PROXIES

 Proxy solicitation is being made  by mail, although it  may also be made  by
 telephone, telegraph, or in person by  officers, directors and employees  of
 the Company not specifically  engaged or compensated  for that purpose.  The
 Company will bear the entire cost of the Annual Meeting, including the  cost
 of preparing,  assembling, printing  and mailing  the Proxy  Statement,  the
 Proxy and any additional materials furnished to stockholders. Copies of  the
 solicitation materials will  be furnished to  brokerage houses,  fiduciaries
 and custodians for  forwarding to the  beneficial owners of  shares held  of
 record by them and, upon their request, such persons will be reimbursed  for
 their reasonable  expenses  incurred  in  completing  the  mailing  to  such
 beneficial owners.


                             FINANCIAL STATEMENTS

 Consolidated financial statements of the Company  are contained in the  2006
 Annual Report which accompanies this  Proxy Statement, and are  incorporated
 herein by reference.


                                OTHER MATTERS

 The Board of Directors knows of no matters that are expected to be presented
 for consideration at the 2006 Annual Meeting which are not described herein.
 However, if other matters properly come  before the meeting, it is  intended
 that the  persons named  in  the accompanying  Proxy  will vote  thereon  in
 accordance with their best judgment.

 By Order of the Board of Directors

 /s/ Michael E. Henry
 --------------------
 Michael E. Henry
 Chairman of the Board

 Monett, Missouri
 September 29, 2006


 A copy of the Company's Annual Report is included herewith. The Company will
 furnish without charge a  copy of its  Annual Report on  Form 10-K as  filed
 with the Securities and Exchange Commission upon written request directed to
 Kevin D. Williams, Chief Financial Officer,  Jack Henry & Associates,  Inc.,
 663 Highway 60, Post Office Box 807, Monett, Missouri, 65708.  The Form 10-K
 is also available at our investor relations website, www.jackhenry.com/ir/.




 Exhibit A

                        JACK HENRY & ASSOCIATES, INC.

                             AMENDED AND RESTATED
                             --------------------
                           AUDIT COMMITTEE CHARTER
                           -----------------------
                          (Revised October 4, 2004)

 Organization

 The Board of Directors of Jack Henry & Associates, Inc. (the "Company")  has
 established its Audit Committee.  The  Audit Committee shall be composed  of
 at least three (3) members of the Board of Directors who are all independent
 of the management of the Company and  are free of any relationship that,  in
 the opinion of the Board of  Directors, would interfere with their  exercise
 of independent judgment as members of  the Audit Committee.  All members  of
 the Audit  Committee must  also qualify  as independent  under all  relevant
 rules and regulations of the Securities and Exchange Commission (the  "SEC")
 and under all  relevant NASDAQ  listing standards.  A  member  of the  Audit
 Committee who enters into any transaction or relationship which causes  such
 member to no longer qualify as independent must immediately notify the other
 members  of  the  Committee  and  the  Chairman  of  the  Board  and  tender
 resignation from the Committee.

 All  members  of  the  Audit  Committee  must  be  capable  of  reading  and
 understanding the Company's financial statements.  In addition, at all times
 at least one  member of the  Committee shall be  a "financial expert"  under
 relevant SEC rules and regulations and NASDAQ listing standards.

 Members of the Audit Committee shall be appointed  by the Board of Directors
 and shall serve at the pleasure of the Board of Directors.  Audit  Committee
 members  shall  be compensated for attendance at meetings as determined from
 time to time  by the Board of Directors.  The Audit Committee chairman shall
 be designated by the full  Board of Directors  at each annual meeting of the
 Board of Directors.  The Disclosure Committee may delegate specific tasks to
 individual members of the Committee.  The duties  and  responsibilities of a
 member of the Audit Committee are in addition to those duties  set  out  for
 the Board of Directors.

 Statement of Policy

 The Audit Committee shall provide assistance  to the corporate directors  in
 fulfilling their responsibility to the shareholders, potential shareholders,
 and  investment  community  relating  to  corporate  accounting,   reporting
 practices of the  Company, and the  quality and integrity  of the  financial
 reports of the Company.  In so doing, it is the responsibility of the  Audit
 Committee to oversee the independent auditor,  and to oversee the  Company's
 system of financial and  disclosure controls and  compliance with legal  and
 regulatory requirements.

                             Statement of Support

 The  Board  of  Directors  shall  cause  the  Company to provide appropriate
 funding and support, as determined by the Audit Committee, for the operation
 of the Audit Committee and for payment  of  compensation  to the independent
 auditors  and  any  other advisers, accountants or independent legal counsel
 retained by the Audit Committee.

 The officers and employees of the Company shall, upon request, meet with the
 Audit Committee or any adviser to the Audit Committee.

 Responsibilities

 1.     Provide an  open avenue of  communication between internal  auditors,
        internal  compliance   staff,  the  independent  auditors,   internal
        financial  management, the  Disclosure Committee,  and the  Board  of
        Directors.

 2.     Review and update the Audit Committee's charter annually.

 3.     Retain  a  registered   public  accounting  firm  (the   "independent
        auditors")  to audit  the financial  statements  of the  Company  and
        regulated  services,  approve  all  audit  and  non-audit   services,
        determine the  compensation of the  independent auditors, review  the
        qualifications  and quality  control  procedures of  the  independent
        auditors,  oversee   their  work,  review   their  performance,   and
        discharge the independent  auditors.  The Audit Committee shall  work
        to resolve  any disagreements between management  of the Company  and
        the independent auditors.  The terms of retention of the  independent
        auditors shall  require that the accounting  firm report directly  to
        the Audit Committee.

 4.     Review the  experience and qualifications  of the  senior members  of
        the audit  staff of the  independent auditors.   Confirm and  oversee
        the  independence  of the  independent  auditors  as  required  under
        applicable  NASDAQ Stock  Market,  SEC and  other  regulatory  rules,
        including  consideration  of  whether  the  provision  of   non-audit
        services is compatible with independence.  The Audit Committee  shall
        require  that the  independent  auditors annually  provide  a  formal
        written   statement  delineating   all  relationships   between   the
        independent  auditor and  the Company,  consistent with  Independence
        Standards Board  Standard 1, and the  Audit Committee shall  actively
        engage in a dialog with  the independent auditor with respect to  any
        disclosed relationships or  services that may impact the  objectivity
        and independence of the independent auditor.

 5.     Inquire of management and the independent auditors at least  annually
        regarding  significant  risks  or  exposures  and  assess  the  steps
        management has taken to minimize such risks to the Company.

 6.     Consider, in consultation with the internal financial management  and
        compliance staff  of the Company  and the  independent auditors,  the
        audit scope and plan of the independent auditors.

 7.     Review  with  internal  financial  management  and  the   independent
        auditors the coordination  of audit effort to assure completeness  of
        coverage, reduction  of redundant efforts, and  the effective use  of
        audit resources.

 8.     Consider with management  and the independent auditors the  rationale
        for  employing  audit firms  other  than  the  principal  independent
        auditors.

 9.     Regularly consider and  review with the independent auditors and  the
        internal financial management:

        *    The adequacy and integrity of the Company's financial  reporting
             process (both  internal and external)  and the internal  control
             structure (including disclosure controls).

        *    The  independent auditor's  judgment as  to the  quality of  the
             Company's financial reporting principles, significant  reporting
             issues and judgments made in connection with the preparation  of
             the financial statements.

        *    Critical accounting policies  and practices of the Company,  and
             alternatives thereto.

        *    The  effect  of  alternative  GAAP  methods  on  the   Company's
             financial statements  and a description  of any transactions  as
             to  which management  obtained Statement  on Auditing  Standards
             No. 50 letters.

        *    Any  related significant  findings  and recommendations  of  the
             independent  auditors,  including  any  response  of   Company's
             management thereto.

 10.    Review  with  management  and  the  independent  accountant  at   the
        completion of the annual financial audit:

        X    The   Company's   annual  financial   statements   and   related
             footnotes.

        X    The independent accountant's  audit of the financial  statements
             and the report thereon.

 11.    Obtain from  the independent auditors assurance  that Section 10A  of
        the Securities Exchange Act of 1934 has not been implicated.

 12.    Discuss  with the  independent auditors  the matters  required to  be
        discussed by Statement on  Auditing Standards No. 61 relating to  the
        conduct of the audit.

 13.    Review filings with the SEC and other published documents  containing
        the  Company's   financial  statements  and   consider  whether   the
        information  contained in  these  documents is  consistent  with  the
        information contained in the financial statements.

 14.    Prepare  the report  required  by the  rules  of the  Securities  and
        Exchange  Commission to  be included  in the  Company's annual  proxy
        statement.

 15.    Review with  management and the  independent auditors each  financial
        report,  including  the  "Management's  Discussion  and  Analysis  of
        Financial Condition  and results of  Operations" and  the results  of
        the  independent accountant's  review  of the  financial  statements,
        before it is filed with the SEC or other regulators.

 16.    Review legal and regulatory matters, related accounting  initiatives,
        and any off-balance sheet structures that may have a material  impact
        on the  financial statements, as well  as related Company  compliance
        policies,  and  programs, correspondence  or  reports  received  from
        banking or  other regulators  which raise  material issues  regarding
        the Company's financial  statements or accounting policies.   Receive
        reports from  the Company's Compliance  Officer.   Review and  advise
        the Board with  respect to insider and affiliated party  transactions
        and violations of the Company's Code of Conduct.

 17.    Review  selection  of  and changes  to  the  Company's  auditing  and
        accounting principles and  practices as suggested by the  independent
        accountant, internal auditors or management.

 18.    Recommend  to  the  Board guidelines  for  the  Company's  hiring  of
        employees or former employees of the independent auditors.

 19.    Meet at least  annually with the independent auditors and  management
        in  separate executive  sessions  to  discuss any  matters  that  the
        Committee or these groups believe should be discussed privately  with
        the  Audit Committee,  including any  disagreements with  management,
        any  restrictions   in  the  scope   of  activities   or  access   to
        information, and  any management letter  provided by the  independent
        auditors and management's response.

 20.    Review  and pre-approve  the retention  and fees  of the  independent
        auditors for any permitted non-audit services.

 21.    Review and approve all material related party transactions.

 22.    Report  Committee  actions  to  the  Board  of  Directors  with  such
        recommendations as the Committee may deem appropriate.

 23.    Conduct  or authorize  investigations  into any  matters  within  the
        Committee's  scope  of responsibilities.    The  Committee  shall  be
        empowered  to  retain  independent  counsel,  accountants,  or  other
        advisers  to assist  it  in the  performance  of its  duties  or  the
        conduct of any investigation.

 24.    Meet in  person or  telephonically at least  four times  per year  or
        more frequently as circumstances require.

 25.    Approve  the Company's  internal  regulatory compliance  audit  plan,
        obtain and  review all internal regulatory  audit reports and  obtain
        and  review all  regulatory review  reports prepared  by  independent
        auditors, including  all reports  prepared pursuant  to Statement  on
        Auditing Standards No. 70.  The Audit Committee shall perform all  of
        the functions  and responsibilities set  forth in  this Charter  with
        regard  to  regulatory  audits, including  but  not  limited  to  the
        retention, review and  discharge of independent auditors, inquiry  of
        and  discussion with  management,  review of  changes  in  practices,
        review of  regulatory correspondence and  reporting to  the Board  of
        Directors.

 26.    Establish  procedures for  the receipt,  retention and  treatment  of
        complaints  received  by  the  Committee  or  the  Company  regarding
        accounting,  internal accounting  controls or  auditing matters,  and
        the  confidential,  anonymous submission  by  employees  of  concerns
        regarding questionable accounting or auditing matters.

 27.    The Committee will perform  such other functions as assigned by  law,
        the Company's charter or bylaws, or the Board of Directors.

                              Limitation of Role

 While the Audit Committee has the  responsibilities and powers set forth  in
 this Charter, it is not the duty of  the Audit Committee to plan or  conduct
 audits  or  to  determine  that  the  Company's  financial  statements   and
 disclosures are complete and accurate and  are in accordance with  generally
 accepted accounting principles and applicable  laws and regulations.   These
 are the responsibilities of management and the independent auditor.



 Exhibit B


                        JACK HENRY & ASSOCIATES, INC.
                      2006 EMPLOYEE STOCK PURCHASE PLAN
                      ---------------------------------

      The  following  constitutes  the  provisions   of  the  Jack  Henry   &
 Associates, Inc. 2006 Employee Stock Purchase Plan.

      1. Purpose.  The purpose of  the Plan is  to provide  employees of  the
 Company and Designated Subsidiaries with  an opportunity to purchase  Common
 Stock through accumulated payroll  deductions.  It is  the intention of  the
 Company that the Plan qualifies as  an "Employee Stock Purchase Plan"  under
 Section 423 of the Code.  The provisions of the Plan, accordingly, shall  be
 construed so as  to extend and  limit participation in  a manner  consistent
 with the requirements of that section of the Code.

      2. Definitions.

           (a) "Board" shall mean the Board  of Directors of  the Company  or
 any committee thereof designated by the Board of Directors of the Company in
 accordance with Section 14.

           (b) "Code"  shall mean  the Internal  Revenue  Code  of  1986,  as
 amended.

           (c) "Common Stock" shall  mean the  common stock  of the  Company,
 $0.01 par  value.

           (d) "Company" shall mean Jack Henry & Associates, Inc.

           (e) "Compensation,"  unless  otherwise  determined  by  the  Board,
 shall mean all cash compensation reportable  on Form W-2, including  without
 limitation base  straight time  gross  earnings, commissions,  payments  for
 overtime, shift  premium,  incentive  compensation, and  bonuses,  plus  any
 amounts contributed  by  the  Participant pursuant  to  a  salary  reduction
 agreement to a  qualified deferred  compensation plan  described in  Section
 401(k) of the Code or a cafeteria plan described in Section 125 of the  Code
 maintained by the  Employer, but excluding  expense reimbursements,  equity-
 based compensation, gains realized in connection with the exercise of  stock
 options  or  participation  in  stock   option  or  purchase  programs   and
 contributions by the Employer to a qualified deferred compensation plan.

           (f) "Designated Subsidiary" shall mean any wholly-owned Subsidiary
 or any other Subsidiary that has been  designated by the Board from time  to
 time in its sole discretion as eligible to participate in the Plan.

           (g) "Effective  Date"  shall   mean  the  date  the  Plan  becomes
 effective as described in Section 23.

           (h) "Employee" shall mean any  person (i) who is an employee of an
 Employer within  the meaning  of Section  3401(c)  of the  Code,  (ii) whose
 customary employment with  the Employer is  at least 20  hours per week  and
 more than 5 months in any calendar year, and (iii) who, as of the Enrollment
 Date, has been employed by the Employer for at least one year.  For purposes
 of the  Plan, the  employment relationship  shall be  treated as  continuing
 intact while  the individual  is on  sick leave  or other  leave of  absence
 approved by the Employer and meeting the requirements of Treasury Regulation
 Section 1.421-7(h)(2).  Where  the period of leave  exceeds 90 days and  the
 individual's right to reemployment is not guaranteed either by statute or by
 contract, the employment relationship shall be deemed to have terminated  on
 the 91st day of such leave.

           (i) "Employer" shall mean the Company or a Designated  Subsidiary,
 as applicable.

           (j) "Enrollment  Date" shall mean the  first Trading  Day of  each
 Offering Period.

           (k) "Exercise Date"  shall  mean the  last  Trading  Day  of  each
 Offering Period.

           (l) "Fair Market Value" shall mean, as of  any date, the value  of
 Common Stock determined as follows:

                     (i) If the Common  Stock is  listed on  any  established
      stock  exchange  or  a   national  market  system,  including   without
      limitation the Nasdaq National Market or The Nasdaq Small Cap Market of
      The Nasdaq Stock  Market, its Fair  Market Value shall  be the  closing
      sales price  for such  stock (or  the  closing bid,  if no  sales  were
      reported) as quoted  on such  exchange or  system for  the last  market
      trading day prior to the date of determination, as reported in The Wall
      Street Journal or such other source as the Board deems reliable;

                     (ii) If the  Common  Stock  is  regularly  quoted  by  a
      recognized securities dealer but selling  prices are not reported,  its
      Fair Market Value shall be the mean of the closing bid and asked prices
      for the Common Stock prior to the date of determination, as reported in
      The Wall  Street  Journal or  such  other  source as  the  Board  deems
      reliable; or

                     (iii) In the  absence of an established  market for  the
      Common Stock, the Fair Market Value thereof shall be determined in good
      faith by the Board.

           (m) "Offering Periods" shall mean the periods of approximately one
 month beginning  on or  after  the Effective  Date  during which  an  option
 granted pursuant to  the Plan may  be exercised as  described more fully  in
 Section 4.

           (n) "Participant" shall  mean an Employee  who participates in the
 Plan.

           (o) "Plan"  shall mean  this Jack Henry  &  Associates, Inc.  2006
 Employee Stock Purchase Plan.

           (p) "Purchase Price" shall mean 95%  of the Fair Market Value of a
 share of Common Stock  on the Exercise Date,  provided, however, that in  no
 event shall the Purchase  Price be less than  $0.01 per share, and  provided
 further that the  Purchase Price may  be adjusted by  the Board pursuant  to
 Section 20.

           (q) "Subsidiary" shall  mean   any  corporation  other  than   the
 Company, in an unbroken chain of corporations beginning with the Company if,
 at the time of granting an option  under the Plan, each of the  corporations
 other than the last corporation in the unbroken chain owns stock  possessing
 50% or more of the total  combined voting power of  all classes of stock  in
 one of the other corporations in such chain.

           (r) "Trading Day"  shall  mean  a  day  on  which  national  stock
 exchanges and the Nasdaq System are open for trading.

      3. Eligibility.

           (a) Any Employee who shall be employed by  an Employer on a  given
 Enrollment Date for an Offering Period  shall be eligible to participate  in
 the Plan during such Offering Period, subject to the limitations imposed  by
 Section 423(b) of the Code.

           (b) Any provisions of the Plan to the contrary notwithstanding, no
 Participant shall be  granted an  option under  the Plan  (i) to the  extent
 that, immediately after  the grant, such  Participant (or  any other  person
 whose stock  would be  attributed to  such Participant  pursuant to  Section
 424(d) of the Code) would own stock of the Company or any Subsidiary  and/or
 hold outstanding options to purchase such stock possessing 5% or more of the
 total combined voting power or value of all classes of stock of the  Company
 or any Subsidiary, or (ii) to the extent that his or her rights to  purchase
 stock under  all  employee stock  purchase  plans  of the  Company  and  its
 Subsidiaries accrue at a rate which exceeds $25,000 of fair market value  of
 such stock (determined at the time such option is granted) for each calendar
 year in which such option is outstanding at any time.

      4. Offering  Periods.  The Plan  shall  be implemented  by  consecutive
 Offering Periods with a new Offering Period commencing on the first  Trading
 Day which is on or after the 16th day  of each calendar month and ending  on
 the last Trading Day  which is on or  before the 15th  day of the  following
 calendar month and continuing thereafter until terminated in accordance with
 Section 20.  The  Board  shall  have the  power to  change the  duration  of
 Offering Periods (including the commencement dates thereof) with respect  to
 future offerings without stockholder approval if such change is announced at
 least 15 days prior to the scheduled beginning of the first Offering  Period
 to be affected thereafter.

      5. Participation.

           (a) An eligible Employee may become a  Participant in the Plan  by
 completing a Subscription  Agreement authorizing payroll  deductions in  the
 form required  by  the  Company  and filing  it  with  the  Human  Resources
 Department of the Company at least 10 calendar days prior to the  applicable
 Enrollment  Date  or  by  such  other  date  as  the  Board  may  prescribe.
 Participation in the Plan shall be voluntary.

           (b) An Employee's Subscription Agreement and participation in  the
 Plan shall  become effective  on the  first  Enrollment Date  following  the
 timely filing  of  his  or her  Subscription  Agreement  and,  provided  the
 Participant continues to  be an  eligible Employee,  shall remain  effective
 until changed or revoked  by the Participant by  filing a Payroll  Deduction
 Authorization Change  or Withdrawal  in the  form  required by  the  Company
 pursuant to Section  6(d) or  10(a).  An  Employee who  becomes eligible  to
 participate in the Plan after the commencement of an Offering Period or  who
 is eligible but declines  to participate prior to  the commencement of  such
 Offering Period  may  not  become  a  participant  in  the  Plan  until  the
 commencement of the next Offering Period.

      6. Payroll Deductions.

           (a) Payroll deductions for  a Participant  shall commence  on  the
 first payday following the Enrollment Date and shall continue on each payday
 during the  Offering  Period  as to  which  the  Participant's  Subscription
 Agreement is applicable.

           (b) At the  time  a Participant  files  his  or  her  Subscription
 Agreement, he or she shall elect to have payroll deductions, determined as a
 whole dollar amount  or a  whole percentage  of Compensation,  made on  each
 payday during the Offering Period in an amount (i) not less than $10.00  per
 pay period, and (ii) not  greater than 10% of  the Compensation which he  or
 she receives  on each  payday  during the  Offering  Period, or  such  other
 minimum or maximum rate as may be determined from time to time by the  Board
 subject to the provisions of Section 20.  Except for the foregoing sentence,
 all eligible Employees shall have the  same rights and privileges under  the
 Plan.

           (c) All payroll  deductions  made  for  a  Participant  shall   be
 credited to  an  individual account  established  under the  Plan  for  such
 Participant.  A Participant may not  make any additional  payments into such
 account.

           (d) A Participant may increase or  decrease the rate of his or her
 payroll deductions with respect to a subsequent Offering Period by filing  a
 Payroll Deduction Authorization  Change or  Withdrawal Form  with the  Human
 Resources Department of the Company, provided that such form is received  at
 least 10 business days prior to such Offering Period and the  Participant is
 an eligible Employee as of the Enrollment  Date of such Offering  Period.  A
 Participant may suspend or discontinue his or her participation in the  Plan
 as provided in Section 10, effective at the time described in Section 10.  A
 Participant may  only file  one Payroll  Deduction Authorization  Change  or
 Withdrawal Form with respect to any Offering Period.

           (e) Notwithstanding  the  foregoing, to  the  extent  necessary to
 comply with Section 423(b)(8) of  the Code and Section  3(b) of the Plan,  a
 Participant's payroll deductions  may be terminated  at any  time during  an
 Offering Period.  Payroll deductions shall  recommence at the rate  provided
 in  such   Participant's  Subscription   Agreement  or   Payroll   Deduction
 Authorization Change or Withdrawal Form, as applicable, at the beginning  of
 the first Offering Period which ends in the following calendar year,  unless
 terminated by the Participant as provided in Section 10.

      7. Grant of  Option.  On  the Enrollment Date  of each Offering Period,
 each Participant participating in the Plan for such Offering Period shall be
 granted an option to purchase on  the Exercise Date of such Offering  Period
 (at the applicable  Purchase Price)  the number  of shares  of Common  Stock
 determined by dividing such Participant's payroll deductions accumulated  in
 the Participant's account as of the Exercise Date by the applicable Purchase
 Price; provided  that  in no  event  shall  a Participant  be  permitted  to
 purchase for the calendar year in which the option is outstanding, more than
 the number of shares obtained by dividing the "applicable dollar amount"  by
 the Fair Market  Value on the  Enrollment Date of  a share  of Common  Stock
 (subject to any  adjustment pursuant to  Section 19),  and provided  further
 that such  purchase  shall  be  subject to  the  limitations  set  forth  in
 Sections 3(b) and 13.  For this  purpose, the "applicable dollar amount"  is
 $25,000, reduced by the Fair Market Value on the applicable Enrollment  Date
 of Common  Stock previously  purchased by  the Participant  under this  Plan
 during the calendar year.  Exercise of the option shall occur as provided in
 Section 8.  The option shall expire on the last day of the Offering Period.

      8. Exercise of Option.

           (a) A Participant's option  for the  purchase of  shares shall  be
 exercised automatically on the Exercise Date, and the maximum number of full
 and fractional (to the fourth decimal place) shares of Common Stock  subject
 to the option  shall be  purchased for  such Participant  at the  applicable
 Purchase Price  with  the  accumulated payroll  deductions  in  his  or  her
 account.  Any other  monies left over in  a Participant's account after  the
 Exercise Date  shall  be  retained in  the  Participant's  account  for  the
 subsequent Offering Period. During a Participant's lifetime, a Participant's
 options are exercisable only by him or her.

           (b) If, on a given Exercise Date, the  number of shares of  Common
 Stock with  respect to  which options  are to  be exercised  may exceed  the
 number of shares available  for sale under the  Plan on such Exercise  Date,
 the Company shall make a pro rata  allocation of the shares of Common  Stock
 available for purchase on such Exercise Date in as uniform a manner as shall
 be practicable among all Participants exercising options to purchase  Common
 Stock on such  Exercise Date on  the basis of  their payroll deductions  for
 such Offering Period.  The balance of the amount credited to the account  of
 each Participant which  has not been  applied to the  purchase  of shares of
 Common Stock shall be paid to  such Participant in one  lump sum in cash  as
 soon as reasonably practicable after the Exercise Date, without any interest
 thereon.

           (c) No  option shall  be exercised  to purchase shares  of  Common
 Stock, and no shares shall be issued by the Company under this Plan,  unless
 such shares are  covered by an  effective registration  statement under  the
 Securities Act of 1933, as amended, or by an exemption therefrom.

      9. Delivery of Stock.  As promptly  as practicable after each  Exercise
 Date on which a purchase of shares occurs, the Company shall arrange for the
 issuance and delivery to, or credit to the account of, each Participant,  as
 appropriate, of the shares purchased upon exercise of his or her option.  At
 the election  of  the Company,  the  issuance  and delivery  of  the  shares
 purchased upon  exercise  of  a participant's  option  may  be  affected  by
 transfer (electronic or otherwise in the discretion of the Company) of  such
 shares to a securities account maintained in the Participant's  name.  Stock
 certificates will be issued  to the Participant when  he or she requests  by
 filing a Stock  Certificate Request  in the  form required  by the  Company;
 provided, however, that the  Company shall not be  obligated to issue  stock
 certificates to Participants  in an  amount less  than 25  shares of  Common
 Stock, except in  cases of  the Participant's  withdrawal from  the Plan  or
 termination of employment or termination of the Plan by the Company.

      10. Withdrawal.

           (a) A Participant may terminate his  or her  participation in  the
 Plan effective as of the first day of  the next Offering Period by filing  a
 Payroll Deduction Authorization  Change or  Withdrawal Form  with the  Human
 Resources  Department  of  the Company.  In  such  case,  the  Participant's
 payroll deductions will continue through the  end of the Offering Period  in
 which such  form  is filed,  all  amounts deducted  from  the  Participant's
 Compensation during such Offering Period will be applied to the purchase  of
 Common Stock  pursuant  to  the Plan,  and  following  such  termination  of
 participation no further payroll  deductions for the  purchase of shares  of
 Common Stock shall be made except  pursuant to a new Subscription  Agreement
 delivered in accordance with Section 5.

           (b) Upon  a Participant's  withdrawal  from  the  Plan,  a   stock
 certificate for the number of whole  shares of Common Stock credited to  the
 Participant's account will be issued by the Company to the Participant,  and
 any fractional share credited to the Participant's account shall be  payable
 to the Participant  in cash  in an  amount equal  to the  Fair Market  Value
 thereof, as soon as administratively practicable following such withdrawal.

      11. Termination of Employment.

           (a) Upon a Participant ceasing  to be an Employee, for any reason,
 the payroll deductions  credited to  such Participant's  account during  the
 Offering Period  and, unless  no further  payroll deductions  would be  made
 because the Participant (or,  in the event of  death, the beneficiary  under
 Section 15) withdraws from the Plan,  the payroll deductions to be  credited
 to such Participant's  account from his  or her final  paycheck but not  yet
 used to  exercise  the option  shall  remain  credited or  be  credited,  as
 applicable, in  the Participant's  account and  applied  toward his  or  her
 option for the  purchase of  shares as  provided herein,  provided that  the
 Participant is an  employee of the  Employer within the  meaning of  Section
 3401(c) of the Code at all times  during the period beginning with the  date
 of the granting of the option and ending on the day three (3) months  before
 the Exercise Date.  The  preceding  sentence notwithstanding, a  Participant
 who receives payment in lieu of notice of termination of employment shall be
 treated as  continuing to  be an  Employee for  the Participant's  customary
 number of  hours per  week of  employment  during the  period in  which  the
 Participant is subject to such payment in lieu of notice.

           (b) Upon a Participant ceasing  to be an Employee, for any reason,
 a stock certificate for the number of whole shares of Common Stock  credited
 to  the  Participant's  account  will  be  issued  by  the  Company  to  the
 Participant (or, in the case of his or  her death, to the person or  persons
 entitled thereto under Section 15), and any fractional share credited to the
 Participant's account shall be payable to  the Participant (or, in the  case
 of his or her death, to the person or persons entitled thereto under Section
 15) in cash in an amount equal to the Fair Market Value thereof, as soon  as
 administratively practicable following such termination of employment.

      12. Interest.  No interest shall accrue on the payroll deductions of  a
 Participant in the Plan.

      13. Stock.

           (a) The Common Stock subject to  issuance under the  terms of  the
 Plan shall  be  authorized but  unissued  shares, previously  issued  shares
 reacquired and held by the Company, or shares acquired on the public market.
 Subject to  adjustment upon  changes in  capitalization  of the  Company  as
 provided in Section 19, the maximum  number of shares of Common Stock  which
 shall be made available for sale under the Plan shall be 1,000,000 shares.

           (b) The Participant shall  have no  interest or  voting rights  in
 shares covered by his or her option until such option has been exercised.

           (c) Shares to be credited to a Participant's account or  delivered
 to the Participant under the Plan  shall, as specified in the  Participant's
 Subscription Agreement, be registered in the  name of the Participant or  in
 the name of the Participant and his or her spouse.

           (d) All cash dividends on  shares of  Common Stock  credited to  a
 Participant's account, including a fractional share, on the dividend  record
 date will be credited on  the pay date to  the Participant's  account.  Such
 dividends  shall  be  reinvested   in  shares  of   Common  Stock  for   the
 Participant's account on the next Exercise Date.

      14. Administration.  The  Plan  shall be administered by the Board or a
 committee of members of the Board appointed by the Board.  The Board or  its
 committee shall have full and exclusive discretionary authority to construe,
 interpret and apply the terms of  the Plan, to determine eligibility and  to
 adjudicate  all  disputed  claims  filed  under  the  Plan.  Every  finding,
 decision and determination made by the Board or its committee shall, to  the
 full extent permitted by law,  be final and binding  upon all parties.  All
 costs and expenses  incurred in connection  with the  administration of  the
 Plan  shall  be  paid  by  the Company.  No member  of  the Board  shall  be
 personally liable for  any action, determination  or interpretation made  in
 good faith with respect to the Plan or  the options, and all members of  the
 Board shall  be fully  protected by  the Company  with respect  to any  such
 action, determination or interpretation.

      15. Designation of Beneficiary.

           (a) A Participant may file a written designation of a  beneficiary
 who is to  receive any shares  of Common Stock  and cash, if  any, from  the
 Participant's account  under the  Plan in  the event  of such  Participant's
 death.  If a  Participant is married and  the designated beneficiary is  not
 the spouse, spousal  consent shall be  required for such  designation to  be
 effective.

           (b) Such  designation  of  beneficiary  may  be  changed  by   the
 Participant at any time by written notice.  In  the event of the death of  a
 Participant and in the absence of a beneficiary validly designated under the
 Plan who is  living at  the time of  such Participant's  death, the  Company
 shall deliver such shares  and/or cash to the  executor or administrator  of
 the estate of the Participant, or  if no such executor or administrator  has
 been appointed  (to the  knowledge  of the  Company),  the Company,  in  its
 discretion and in full satisfaction of its obligations with respect to  such
 Participant, may deliver such shares and/or cash to the spouse or to any one
 or more  dependents  or relatives  of  the  Participant, or  if  no  spouse,
 dependent or relative is known to the Company, then to such other person  as
 the Company may designate.

      16. Transferability.   Neither  payroll   deductions   credited  to   a
 Participant's account nor any option or  rights with regard to the  exercise
 of an option may be assigned, transferred, pledged or otherwise disposed  of
 in any way (other than by will, the  laws of descent and distribution or  as
 provided in Section 15) by the Participant.  Any such attempt at assignment,
 transfer, pledge or other disposition shall  be without effect, except  that
 the Company may treat such act as an  election to withdraw from the Plan  in
 accordance with Section 10.

      17. Use  of Funds.   All payroll  deductions received  or held  by  the
 Company under the Plan may be used by the Company for any corporate purpose,
 and the Company shall not be obligated to segregate such payroll deductions.

      18. Reports.   Individual   accounts  shall  be  maintained  for   each
 Participant  in  the  Plan.    Statements  of  account  shall  be  given  to
 Participants at least annually, which statements shall set forth the amounts
 of payroll deductions, the  Purchase Price, the  number of shares  purchased
 and the remaining cash balance, if any, in the Participant's account.

    19. Adjustments upon Changes in Capitalization, Dissolution, Liquidation,
        Merger or Asset Sale.

           (a) Changes in Capitalization.  Subject to any required action  by
 the stockholders  of the  Company,  the number  of  shares of  Common  Stock
 covered by each option under the Plan  which has not yet been exercised  and
 the number of shares of Common Stock which has been authorized for  issuance
 under the Plan but has not  yet been placed under  option or which has  been
 returned to the  Plan upon the  cancellation of an  option, as  well as  the
 price per share of Common Stock covered by each option under the Plan  which
 has not  yet  been exercised,  shall  be proportionately  adjusted  for  any
 increase or  decrease  in  the  number of  issued  shares  of  Common  Stock
 resulting  from  a  stock  split,  reverse  stock  split,  stock   dividend,
 combination or reclassification of the Common  Stock, or any other  increase
 or decrease in the number of shares of Common Stock effected without receipt
 of consideration by the Company; provided,  however, that conversion of  any
 convertible securities  of the  Company shall  not be  deemed to  have  been
 "effected without receipt of consideration."  Such adjustment shall be  made
 by the Board, whose  determination in that respect  shall be final,  binding
 and  conclusive.  Except as expressly  provided herein, no  issuance by  the
 Company of shares  of stock  of any  class, or  securities convertible  into
 shares of stock  of any  class, shall affect,  and no  adjustment by  reason
 thereof shall be  made with respect  to, the number  or price  of shares  of
 Common Stock subject to an option.

           (b) Dissolution or Liquidation.  In  the  event  of  the  proposed
 dissolution or  liquidation of  the Company,  the  Offering Period  then  in
 progress shall  be  shortened by  setting  a  new Exercise  Date  (the  "New
 Exercise Date"), and shall terminate  immediately prior to the  consummation
 of such proposed  dissolution or liquidation,  unless provided otherwise  by
 the Board (or a  committee of the Board).   The New  Exercise Date shall  be
 before the date of the Company's  proposed dissolution or liquidation.   The
 Board (or  a  committee of  the  Board)  shall notify  each  Participant  in
 writing, at least 10 business days prior to the New Exercise Date, that  the
 Exercise Date  for the  Participant's option  has been  changed to  the  New
 Exercise  Date  and  that  the  Participant's  option  shall  be   exercised
 automatically on the New Exercise Date.

           (c) Merger or Asset Sale.  In  the event of a proposed sale of all
 or substantially all  of the assets  of the Company,  or the  merger of  the
 Company with or into another corporation,  each outstanding option shall  be
 assumed or an equivalent option substituted by the successor corporation  or
 a parent or subsidiary of the successor corporation.  In the event  that the
 successor corporation refuses to  assume or substitute  for the option,  any
 Offering Period  then  in progress  shall  be  shortened by  setting  a  new
 Exercise Date (the  "New Exercise  Date") and  any Offering  Period then  in
 progress shall end on the New Exercise Date.  The New Exercise Date shall be
 before the date of the Company's proposed  sale or merger.  The Board  shall
 notify each Participant in writing, at  least 10 business days prior to  the
 New Exercise Date, that the Exercise  Date for the Participant's option  has
 been changed to  the New  Exercise Date  and that  the Participant's  option
 shall be exercised automatically on the New Exercise Date.

      20. Amendment or Termination.

           (a) The Board may  at any  time and  for any  reason terminate  or
 amend the Plan.  Except as provided  in Section 19, no such termination  can
 affect options previously granted, provided that  an Offering Period may  be
 terminated by the Board  on any Exercise Date  if the Board determines  that
 the termination of the Offering Period or the Plan is in the best  interests
 of the Company and its stockholders.   Except as provided in Section 19  and
 this Section 20, no amendment may make any change in any option  theretofore
 granted which adversely affects  the rights of  any Participant without  the
 prior written  consent of  such Participant.   To  the extent  necessary  to
 comply with Section 423 of the Code  (or any successor rule or provision  or
 any other applicable law,  regulation or stock  exchange rule), the  Company
 shall obtain stockholder approval in such a  manner and to such a degree  as
 required.

           (b) Without stockholder consent and without regard to whether  any
 Participant rights may be considered to have been "adversely affected,"  the
 Board shall, in its absolute discretion, be entitled to change the  Offering
 Periods, limit the frequency and/or number of changes in the amount withheld
 during an  Offering  Period,  establish the  exchange  ratio  applicable  to
 amounts withheld  in a  currency other  than  U.S. dollars,  permit  payroll
 withholding in excess of the amount designated by a Participant in order  to
 adjust for  delays  or mistakes  in  the Company's  processing  of  properly
 completed withholding elections, establish reasonable waiting and adjustment
 periods and/or accounting  and crediting procedures  to ensure that  amounts
 applied toward the purchase  of Common Stock  for each Participant  properly
 correspond  with  amounts  withheld  from  the  Participant's  Compensation,
 increase or  decrease  the  maximum  number of  shares  of  Common  Stock  a
 Participant may purchase, subject  to the limits of  Section 7, during  each
 Offering Period, establish and/or modify  time frames, forms and  procedures
 with respect  to  administration  of the  Plan,  and  establish  such  other
 limitations or  procedures  as the  Board  (or  a committee  of  the  Board)
 determines in its sole  discretion advisable which  are consistent with  the
 Plan.

           (c) In the event the Board determines  that the ongoing  operation
 of the Plan may result in unfavorable financial accounting consequences, the
 Board may, in  its discretion  and, to  the extent  necessary or  desirable,
 modify or amend the Plan to reduce or eliminate such accounting  consequence
 including, but not limited to:

                     (i) Altering the Purchase Price for any Offering  Period
      including an Offering  Period underway  at the  time of  the change  in
      Purchase Price;

                     (ii) Shortening any  Offering Period  so  that  Offering
      Period ends  on  a new  Exercise  Date, including  an  Offering  Period
      underway at the time of the action of the Board (or a committee of  the
      Board); and

                     (iii) Allocating shares.

           Such modifications  or amendments  shall not  require  stockholder
 approval or the consent of any Plan Participants.

      21. Notices.  All notices or other  communications by a Participant  to
 the Company or any Employer  under or in connection  with the Plan shall  be
 deemed to have been duly  given when received in  the form specified by  the
 Company at the location, or by the person, designated by the Company for the
 receipt thereof.

      22. Conditions Upon Issuance of  Shares.   Shares shall  not be  issued
 with respect  to  an option  unless  the exercise  of  such option  and  the
 issuance and delivery of such shares pursuant thereto shall comply with this
 Plan and all applicable provisions of  law, domestic or foreign,  including,
 without limitation, the Securities Act of  1933, as amended, the  Securities
 Exchange Act  of 1934,  as amended,  the rules  and regulations  promulgated
 thereunder, and the requirements of any stock exchange upon which the shares
 may then be listed, and shall be further subject to the approval of  counsel
 for the Company with respect to such compliance.

      As a condition to  the exercise of an  option, the Company may  require
 the person exercising such  option to represent and  warrant at the time  of
 any such exercise that  the shares are being  purchased only for  investment
 and without any present intention to  sell or distribute such shares if,  in
 the opinion of counsel for the Company, such a representation is required by
 any of the aforementioned applicable provisions of law.

      23. Term of Plan.  The Plan shall become  effective upon the first  day
 of the month following the last  to occur of its  adoption by the Board  and
 its approval by the stockholders of the Company.  The Plan shall continue in
 effect for a term of 10 years unless sooner terminated under Section 20.

      24. Shareholder Approval.   Notwithstanding  anything to  the  contrary
 herein, the effectiveness of the Plan shall be expressly subject to approval
 by the Company's stockholders within 12 months before or after the date  the
 Plan is adopted by  the Board by the  affirmative vote of  the holders of  a
 majority of  the outstanding  shares  of stock  of  the Company  present  or
 represented and entitled to vote thereon at a shareholder meeting duly  held
 or by written consent in accordance with applicable law

      25. Equal Rights and Privileges.   All Employees will have equal rights
 and privileges under  the Plan so  that the Plan  qualifies as an  "employee
 stock purchase  plan" within  the meaning  of  Section 423  of the  Code  or
 applicable Treasury regulations thereunder.  Any provision of the Plan  that
 is inconsistent  with  Section  423  of  the  Code  or  applicable  Treasury
 regulations will, without  further act or  amendment by the  Company or  the
 Board,  be  reformed  to  comply  with  the  equal  rights  and   privileges
 requirement of Section 423 of the Code or applicable Treasury regulations.

      26. No Employment Rights.  Nothing  in the Plan  shall be construed  to
 give any person (including any Employee or Participant) the right to  remain
 in the employ of the Company, or a Subsidiary or to affect the right of  the
 Company, or  any  Subsidiary  to terminate  the  employment  of  any  person
 (including any Employee or Participant) at any time, with or without cause.

      27. Notice of Disposition  of  Shares.   Each  Participant  shall  give
 prompt notice to  the Company of  any disposition or  other transfer of  any
 shares of  Common  Stock  purchased  upon exercise  of  an  option  if  such
 disposition or transfer  is made (i) within  two years  from the  Enrollment
 Date  of  the  Offering  Period  in  which  the  shares  were  purchased  or
 (ii) within one  year after  the Exercise  Date on  which such  shares  were
 purchased.  Such notice shall specify the date of such disposition or  other
 transfer and the  amount realized, in  cash, other  property, assumption  of
 indebtedness or other consideration, by the Participant in such  disposition
 or other transfer.

      28. Governing Law.  To the  extent that Federal  laws do not  otherwise
 control, the  Plan and  all determinations  made or  actions taken  pursuant
 hereto shall  be governed  by the  laws of  the state  of Delaware,  without
 regard to the conflicts of laws rules thereof.

      29. Tax Withholding.   If at any time the  Company or any Subsidiary is
 required, under applicable laws and regulations, to withhold, or to make any
 deduction of, any  taxes or  take any other  action in  connection with  any
 exercise of an  option granted  hereunder or  any disposition  of shares  of
 Common Stock issued hereunder, the Participant must make adequate  provision
 for  the  Company's  or  such  Subsidiary's  federal,  state  or  other  tax
 withholding obligations which arise from  such exercise or disposition.  The
 Company or such Subsidiary shall have  the right  to deduct or withhold from
 the Participant's compensation the amount necessary for the Company or  such
 Subsidiary to meet applicable withholding obligations.

 The foregoing Plan was approved and adopted by the Board of Directors on
 August 25, 2006.


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                                    Please mark, sign and date your proxy
                                    card and return it in the postage-paid
                                    envelope provided or return it to: Proxy
                                    Tabulator, P.O. Box 535450, Pittsburgh PA
                                    15253.

 ----------------------    ----------------------    -----------------------
    Vote by Telephone         Vote by Internet            Vote by Mail
 Call Toll-Free using a    Access the Website and       Return your proxy
  touch-tone telephone:       cast your vote:          in the postage-paid
     1-888-693-8683           www.cesvote.com           envelope provided
 ----------------------    ----------------------    -----------------------

                     Vote 24 hours a day, 7 days a week.

 If you vote by telephone or over the Internet, do not mail your proxy card.
      Telephone and Internet votes must be received by 6:00 a.m. EST on
           October 31, 2006 to be included in the final tabulation.

                      ===================================
                      ->
                      ===================================

      If voting by mail, this proxy card must be signed and dated below.
           Please fold and detach card at perforation before mailing.
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 Proxy                   Jack Henry & Associates, Inc.                 Proxy
                                663 Highway 60
                                 P.O. Box 807
                            Monett, Missouri 65708

         This proxy is Solicited on Behalf of the Board of Directors

 The undersigned hereby appoints John F. Prim and Kevin D. Williams as Proxies,
 each with the power to appoint his or her substitute, and hereby authorizes
 them to represent and to vote, as designated below, all the shares of common
 stock of Jack Henry & Associates, Inc. held of record by the undersigned on
 September 22, 2006, at the annual meeting of shareholders to be held on
 October 31, 2006 or any adjournment thereof.


                       Dated , _________________________________________2006.

                       ______________________________________________________
                       Signature

                       ______________________________________________________
                       Signature if held jointly

                       Please sign exactly as name appears below. When shares
                       are held by joint tenants, both should sign. When
                       signing as attorney, executor, administrator, trustee
                       or guardian, please give full title as such. If a
                       corporation, please sign in full corporate name by
                       President or other authorized officer. If a partnership,
                       please sign in partnership name by authorized person.



                            YOUR VOTE IS IMPORTANT

 If  you do not vote by telephone  or  Internet,  please sign  and  date this
 proxy card and return it promptly in the enclosed postage-paid envelope,  or
 otherwise to Proxy Tabulator, P.O. Box 535450, Pittsburgh, PA 15253, so your
 shares will be represented at the  Annual Meeting. If you vote by  telephone
 or Internet, it is not necessary to return this proxy card.


             Please fold and detach card at perforation before mailing.
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 This proxy, when properly executed, will be voted in the manner directed
 herein by the undersigned stockholder.

 If no direction is made, this proxy will be voted FOR Proposal 1 and
 Proposal 2.

 The Board of Directors Recommends a Vote FOR Proposals 1 and 2.

 1. ELECTION OF DIRECTORS:

   [   ]  FOR all nominees listed below       [   ]  WITHHOLD AUTHORITY to
 (except as marked to the contrary below)  vote for all nominees listed below

 INSTRUCTIONS: To withhold authority to vote for any individual nominee,
 strike a line through the nominee's name in the list below.

 (1) J. Henry     (2) J. Hall    (3) M. Henry    (4) J. Ellis   (5) C. Curry
 (6) J. Maliekel  (7) W. Brown


 2. To approve the Company's 2006 Employee Stock Purchase Plan.

   [   ]    FOR         [   ]     AGAINST     [   ]     ABSTAIN


 3. In their discretion, the Proxies are authorized to vote upon such other
 business as may properly come before the meeting.


    (PLEASE MARK, SIGN, DATE AND RETURN THE PROXY CARD PROMPTLY USING THE
                              ENCLOSED ENVELOPE)